Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3524 174 3e-38 >seq3524 Length=35516 Score = 174 bits (192), Expect = 3e-38 Identities = 610/938 (65%), Gaps = 21/938 (2%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| || ||||| ||||| || ||||||| |||||||| || || || Sbjct 11119 GGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGATGATCTCCGTGCACAG 11178 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| ||||||| ||||| | | || || |||||| ||||| || ||||| Sbjct 11179 GTTGGAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTTGAGATTGCAGGCATCCTT 11238 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 | |||||||| |||| ||| ||||||| ||| | ||| | | ||| || | Sbjct 11239 GAAGAGCATATAGGGCGTGCCCGTCTCCACCTGTGAGTCCAACACCGCAAACCACAGCTG 11298 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCT--CGGTCTTTTCATACCCGGTATAGAGC 221950 ||| | | || |||| || || | | |||| || ||| ||| ||| Sbjct 11299 CTGGGCCTTGA---TCACCTTGC--GCGCCTTGCCACTCTTCTCGTACGTCTCATACAGC 11353 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | ||| | || || | | || ||||||| || ||| | ||| || | |||| Sbjct 11354 TGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAGAACAGA 11413 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| || || | || | ||||||||| || || || |||| || || | Sbjct 11414 GACCAGTCGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAGGGCGTAG 11473 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || | || | || ||||| | ||| ||||| ||| || | |||||||| ||||| Sbjct 11474 AACAAGTCGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTGCGCAGATCCAGGAACTCG 11533 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || || || |||||||| |||||||| |||| ||| | || ||| |||||| ||| Sbjct 11534 AAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTTGCCCCCA 11593 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| ||||| | || ||||||||| || || | || || | |||||| Sbjct 11594 CCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATGCCGTTG 11653 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGC---AGAC 222307 || ||||| | ||| ||||||| | | |||| | |||| ||| |||| Sbjct 11654 GAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTA-TGGATCGAGAC 11712 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | || || ||||| ||| || ||||| || || |||||||||||| ||| Sbjct 11713 A--CCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAGAGTGTCATAGATA 11770 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 || || || ||||||||||| | | |||| || || || || || | ||| | | Sbjct 11771 CCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCGCGGC 11830 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATC 222486 | | |||||| || || || || ||||||| || ||| ||| || ||||| |||| Sbjct 11831 GTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAG-AGCTTCTGGGACATGAGATT 11889 Query 222487 GTACGTCTCTA-CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGT 222545 ||| ||||| | || | | | | | || ||| || || ||||| | |||| Sbjct 11890 GTAGGTCTCAATCGCCGC-GTCCACGTCCTCCTTATGGATTCCAATGGCTACGCGCATGA 11948 Query 222546 ACATGTACTGGGGCCTCTCCA-CAGGA-CCCTTGGAGCTGGAGAGCAGGTACGATTTTTC 222603 ||||| |||||| | ||||| | || || | | || ||||||||| || || || Sbjct 11949 TCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCATCT--TGAGCAGGTAGGACTTCTC 12006 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTC 222641 ||| |||||||| || || |||| ||| ||||||| Sbjct 12007 CAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTCTC 12044 Score = 93.3 bits (102), Expect = 8e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 221104 GACCATGTGCTTGTTCACCACTTGGAAAT-CTCCCGAGAGCACCCTCCTCTGGTACAGGT 221162 || || || |||||| || | | | |||| | |||| ||||| | | | |||| || Sbjct 10513 GAGCAGGTACTTGTTGACGA-TGGTAAATTCGCCCGCCAGCACGCGGCGCGAATACATGT 10571 Query 221163 TAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGG 221222 | || ||||| || || | | |||||||||||||||||| || |||||| |||||||| Sbjct 10572 TGGACGTGAAGGGCTCCACGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGG 10631 Query 221223 GCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 ||||||| |||| |||||| ||||||| Sbjct 10632 GCATGGGCGCCAGCAGCAGGGAATTGCGCA 10661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928776866613440