Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq5733 650 0.0 seq225 529 2e-145 >seq5733 Length=57551 Score = 650 bits (720), Expect = 0.0 Identities = 727/969 (75%), Gaps = 2/969 (0%) Strand=Plus/Minus Query 8257 TGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCA 8316 ||| ||||| || | || || || || |||| ||||| || ||| | ||||||||| Sbjct 41847 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 41788 Query 8317 ACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGAC 8376 || | | | ||||||| |||||||| | ||| ||| | || || ||||| || || Sbjct 41787 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 41728 Query 8377 ATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCT 8436 ||||| || ||||| |||||||| |||||||| || | ||||| |||||||| ||| | Sbjct 41727 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 41668 Query 8437 GGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCC 8496 ||||||||| |||| || |||||||| ||||| | ||||||||||| | |||||||| Sbjct 41667 GGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 41608 Query 8497 GCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTC 8556 || ||| | || |||||||| |||||||||||||||||||| |||||||| || |||||| Sbjct 41607 GCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 41548 Query 8557 CTCCTTGGCGTCT-TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCAT 8615 | | || || ||||| | ||||| ||||||||||||||| ||||| | || || Sbjct 41547 TTATTAGGTGTAGCTTGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGAT 41489 Query 8616 GCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCT 8675 |||||||||||| | || || | ||| ||||| || || || || ||||| |||||| | Sbjct 41488 GCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTT 41429 Query 8676 TGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTAC 8735 || || || |||| |||||| |||||||||||||||||| | ||||| || ||||| Sbjct 41428 AGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTAC 41369 Query 8736 GTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACAT 8795 ||||||| ||| | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 41368 TTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATAT 41309 Query 8796 GCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGT 8855 | ||||||||||||||| || || |||||| | || || ||||| ||||| || || Sbjct 41308 GGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGT 41249 Query 8856 TACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTT 8915 || ||| | | ||||| || || || ||| ||||| || ||||| || Sbjct 41248 AACATCTAGTTTAATCCGTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATT 41189 Query 8916 CGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGAT 8975 ||| |||||||| |||||||||||||| || || || || || |||||||| || || || Sbjct 41188 CGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAAT 41129 Query 8976 CTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCC 9035 ||||||||| || ||| ||||| || | || || |||||| | ||||| ||||| Sbjct 41128 CTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCC 41069 Query 9036 TGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGG 9095 || || || |||||||| || || || || || || ||||| || ||| | || || Sbjct 41068 AGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGG 41009 Query 9096 CTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGA 9155 |||||||||||||| || || | || | ||||| || ||| ||||||| ||||| || Sbjct 41008 TTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGA 40949 Query 9156 CGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAACTT 9215 | | | ||||| || | | ||||||||||| ||||||||| | ||||| |||||||| Sbjct 40948 CATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTT 40889 Query 9216 CCCGCTTGA 9224 ||| || || Sbjct 40888 CCCTCTAGA 40880 >seq225 Length=49998 Score = 529 bits (586), Expect = 2e-145 Identities = 733/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 |||||| | | ||||||||| | ||||||||||| || || ||| | |||||||| || Sbjct 37823 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGC 37882 Query 9875 CTACTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTT 9933 || || || ||||| || || | ||||||| ||||||| ||| | || || || || || Sbjct 37883 CT-TTTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 37941 Query 9934 TGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCT 9993 ||| || |||||| ||||| ||| | ||| | ||| | || || ||| ||| | Sbjct 37942 TGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTT 38001 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || | || || ||||| || || | ||||||||| || | || || | ||||| Sbjct 38002 AACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGG 38061 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 ||||| | || ||||||||| || ||| | || |||| ||| | ||||||||| | Sbjct 38062 ACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTAT 38121 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || || ||||| || || | |||||| || || ||||| || || ||| | || | Sbjct 38122 AGCACTACACGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCG 38181 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 | | || || || || ||||| || || || || ||||| |||||||| || ||||| Sbjct 38182 TCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGT 38241 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||| | || ||||| || ||||| | ||||||||||| || || ||||| || Sbjct 38242 TTCTGTATTCTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGG 38301 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || || || |||||||| || | | ||| | || || || ||||| ||||| || || Sbjct 38302 GGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAA 38361 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 ||| |||||||||||||| || || || || | ||||| || | |||| ||||| || Sbjct 38362 TCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCA 38421 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 |||| ||| |||||||| ||||| | | ||||||| || |||||||| ||| || Sbjct 38422 TGGAGCCACAGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGC 38481 Query 10474 TTTTGATAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGT 10532 ||| | | | || ||| |||||| || ||||||||||| || || || | ||||||| Sbjct 38482 GTTT-ACACCAACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGT 38540 Query 10533 CCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTG 10592 | || || ||||| | ||||| || ||||| |||||||||||||| ||| | |||| Sbjct 38541 CTCAAATTTTTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 38600 Query 10593 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 10652 | ||||| | ||| | ||||| |||| |||| || ||||| | || | ||| | Sbjct 38601 TTCCTGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAA 38660 Query 10653 GTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGT 10712 | || |||||||| |||||||||||| | | ||| | |||||||| |||||||| || | Sbjct 38661 GAGCATACGATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTT 38720 Query 10713 TCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACC 10772 |||| || || |||||| | | || |||||| || | | |||||||| || |||| Sbjct 38721 TCTACACTAAAAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACC 38780 Query 10773 AACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGAT 10832 ||||||| |||| ||||| |||||||| || ||| | || | || || || || | || Sbjct 38781 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38840 Query 10833 A 10833 | Sbjct 38841 A 38841 Score = 102 bits (112), Expect = 8e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 15402 CGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAAA 15461 ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||||| Sbjct 47104 CGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTCAAA 47163 Query 15462 TCCTGTATTCCCGA 15475 |||||| |||||| Sbjct 47164 TCCTGTCATCCCGA 47177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 26435 ATAACTCAATCCCAAGTAGCTCAGTGGCAGAGCCGCCGACTGTTAATCGGCTGGTCGCTG 26494 |||| | ||||| ||||||||||||| ||||| || ||||||| || ||||||||| Sbjct 43174 ATAAATAAATCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTG 43115 Query 26495 GTTCAAATCCAGCCTTGGGAGTTT 26518 |||||| |||||||| |||||||| Sbjct 43114 GTTCAAGTCCAGCCTGGGGAGTTT 43091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516442225944000