Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq225 147 1e-29 >seq225 Length=49998 Score = 147 bits (162), Expect = 1e-29 Identities = 122/149 (82%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 35270 GTAACAAAAGCAGTTATTACAGTGCCTGCATATTTTAACGATTCTCAGCGACAAGCGACG 35329 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||| || || | ||||| ||| | | |||||||||||||||||||||||||||||| Sbjct 35330 AAAGACGCTGGTAAGATTGCGGGTTTAGAAGTTTTACGTATTATTAATGAACCAACAGCA 35389 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||||||||||||||| | || || || Sbjct 35390 GCAGCACTTGCTTATGGTTTAGACAAAAA 35418 Score = 116 bits (128), Expect = 2e-20 Identities = 261/393 (66%), Gaps = 12/393 (3%) Strand=Plus/Plus Query 475790 GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT 475849 || ||||| ||||||| ||||||| |||||||||| | | | || || || | || Sbjct 35957 GTTAATCCCGATGAAGTTGTTGCAGTTGGAGCTGCTATTAATGGCGCGGTTCTAGCTGG- 36015 Query 475850 CAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 ||||| | || || || || | | || ||||| || | || ||||| Sbjct 36016 --------CGAGA---TCAAAGATGTTTTATTATTAGATGTAACACCTTTATCTTTAGGA 36064 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 |||||||| | ||||| | ||||||| | ||||| ||||| || | || ||| Sbjct 36065 GTTGAAACAATCGGAGGTCTAATGACTAGAATGATTGAAAGAAACACAACAATTCCAGCT 36124 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 | |||| || || |||||| ||| | ||||||||| ||| ||| ||||| | Sbjct 36125 ACAAAAACAGAAACATTTTCAACTGCTGAAGATAATCAACCAAAAGTAGATATCCATGTA 36184 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | |||||||| | | | | ||||||||| | | || ||| | |||| | Sbjct 36185 CTACAAGGTGAACGTTTACTTGCCTCAGATAATAAAAGTTTAGGCCATTTCGAACTTGGA 36244 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||| | | ||||| ||||| || || ||||| || || || ||||||||||| ||| Sbjct 36245 AATATTTCGGCGGCTCCTAGAGGTGTACCACAAATCGAGGTAACATTTGATATTGACGCA 36304 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAA 476182 ||||||||||| || ||| |||||||| Sbjct 36305 GATGGTATTCTTTCCGTACGAGCTCGTGATAAA 36337 Score = 113 bits (124), Expect = 3e-19 Identities = 210/309 (68%), Gaps = 21/309 (7%) Strand=Plus/Minus Query 290654 TTCATTATTTCATAATCAATATCTTCTCCACCCAAATAAGAATTACCTGTCATAGCTAAT 290713 ||||||||| || | |||| ||| |||||||| |||| | || ||| | | |||||| Sbjct 35565 TTCATTATTGCAGAGTCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAAT 35506 Query 290714 GTTCTAAATAAACCGTCATTAATATTCATTAATGAAATATCTAATGTTCCTGCACCAAAA 290773 | ||||| ||| || || | | | ||||| ||| ||||| || |||| ||| Sbjct 35505 ACTTCAAATACACCATCTCCAACTTCTAAAATTGAAACATCAAATGTACCACCACCTAAA 35446 Query 290774 TCGTATAT-AATAACATTACCTCCATTT--TTATTTGTCCAAGTTTTGCTTCCAAGACCA 290830 || | || |||| | || | |||| || |||||| || |||| Sbjct 35445 TCAAAGATTAATATCGTTTC----ATTTGCTTTTTTGTCTAA--------------ACCA 35404 Query 290831 TATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATT 290890 || | | || ||||||||||||||||| ||||| | ||| || || | ||| ||||| Sbjct 35403 TAAGCAAGTGCTGCTGCTGTTGGTTCATTAATAATACGTAAAACTTCTAAACCCGCAATC 35344 Query 290891 TTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATA 290950 || | | ||| || || || || || | ||| |||||||| ||||| ||||||||| Sbjct 35343 TTACCAGCGTCTTTCGTCGCTTGTCGCTGAGAATCGTTAAAATATGCAGGCACTGTAATA 35284 Query 290951 ACAGCTTTT 290959 || |||||| Sbjct 35283 ACTGCTTTT 35275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267928222220948