Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq5733 720 0.0 seq225 578 4e-160 >seq5733 Length=57551 Score = 720 bits (798), Expect = 0.0 Identities = 750/975 (77%), Gaps = 14/975 (1%) Strand=Plus/Minus Query 160885 TGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCC 160944 ||| |||| ||||| || ||||| | || | ||||||||||| || | ||||| || Sbjct 41847 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 41788 Query 160945 TGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGAC 161004 || | | ||||| | || |||||||| || ||| | | || || || || || Sbjct 41787 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 41728 Query 161005 ATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCT 161064 ||||| || || |||||||| || ||||| || || | || ||||||||||| ||| | Sbjct 41727 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 41668 Query 161065 GGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCA 161124 ||||| ||||| ||| |||||||||||| ||| | ||||||||||| | |||||||| Sbjct 41667 GGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 41608 Query 161125 GCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACT 161182 || ||||| ||||| ||||| |||||||||||||||| |||||| || || || |||| Sbjct 41607 GC--GTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACT 41550 Query 161183 TCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGG 161240 || | | || | || |||| ||||||| ||||| ||||||||| |||||| | || Sbjct 41549 TCTTATTAGGTGTAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGG 41492 Query 161241 AATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTT 161300 |||||||||||||||| |||||| | ||| ||||| || |||||||| |||||| || Sbjct 41491 GATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATT 41432 Query 161301 CCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGG 161360 | | || || || | || |||||| |||||||||| |||||| | || || ||||| Sbjct 41431 CTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGG 41372 Query 161361 TACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCA 161420 ||| ||||||| |||| | || ||||||||||| ||||||||||| |||||||| ||||| Sbjct 41371 TACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCA 41312 Query 161421 TATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCT 161480 |||| || || || ||||||||||| || ||| | |||||||| ||||||||||| || Sbjct 41311 TATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCT 41252 Query 161481 GGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGA-GTCCCAG--AACTATGGTTA 161537 || || ||| | | |||||||| ||| ||| || | | ||||| ||||| Sbjct 41251 TGTAACATCTAGTTTAATCCGTGAAACT---GAAGACGGCGTATCTGCTAACTACGGTTA 41195 Query 161538 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCG 161597 ||| ||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| || || Sbjct 41194 CAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACG 41135 Query 161598 TCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGC 161657 | | || ||||||||||| ||||||||||| || | | ||||||||| | ||||| Sbjct 41134 TTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGC 41075 Query 161658 TTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCT 161717 ||||| ||||| || |||||||| ||||| || || || || || |||||||| ||| | Sbjct 41074 ATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTT 41015 Query 161718 GAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTG 161777 || ||||||||||||||||| || | ||||||||||| ||| || |||||||| || Sbjct 41014 AAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTG 40955 Query 161778 GGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCA 161837 ||| ||| || |||||||||||| | | || |||||||| |||||||| || || || || Sbjct 40954 GGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCA 40895 Query 161838 CAACTTCCCTCTTGA 161852 |||||||||||| || Sbjct 40894 CAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 578 bits (640), Expect = 4e-160 Identities = 739/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 162189 CCCA-CTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 162247 |||| | || | |||||| |||| || ||| | || || || ||||| || || ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 162248 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGT 162307 ||||||||| ||| | || ||| ||| | || || ||||| | |||| ||||| Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 162308 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 162367 || || |||||| || ||||||||| || | | | ||||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 162368 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 162427 ||| || |||| || ||| ||| |||| ||| | ||| ||||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 162428 AGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGTA 162486 || |||| | || || ||| || || || || || || | || || ||| | |||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 162487 TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 162546 ||||||| ||||| || ||||| ||||| || |||||||| ||||| ||| ||| || Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 162547 TTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAA 162606 | || |||||| | |||||| | ||||||||||| || || ||||| ||||| | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 162607 TCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACA 162666 | |||||||| | | ||| | ||||| |||||||||||||| || ||||| || || | Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 162667 TGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAG 162726 ||||||| |||||||| || | || |||||||| | ||||| |||||||||| |||| Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 162727 TTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCC- 162785 | ||||||||||| | |||||||| || |||||||| || || ||| || || Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTT-ACACCA 38491 Query 162786 ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTC 162845 ||||| |||||||| ||||||||||| || ||||| | |||||||| || ||||| Sbjct 38492 ACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTT 38551 Query 162846 GGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATG 162905 ||| | ||||| ||||| |||||| | |||||||| ||| | |||||||| || | Sbjct 38552 GGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACA 38611 Query 162906 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGAC 162965 ||| | |||||||||||| | |||||| |||| | || | ||| | | || ||||| Sbjct 38612 GGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGAT 38671 Query 162966 TTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAG 163025 || ||||||||||| |||||||||| ||||| || || ||||| || ||||| || || Sbjct 38672 TTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 38731 Query 163026 AACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAG 163085 || || | | |||||||| || || | ||| | || || |||||||| ||||| Sbjct 38732 AATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAA 38791 Query 163086 AACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCTATGATA 163135 || ||||| ||||| || ||||| || ||| | || ||||| || | ||| Sbjct 38792 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 ||||| |||||||||| ||||||||||| ||||||||||||| | ||| ||||||| | Sbjct 47103 ACGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTCAA 47162 Query 157749 ATCCTGTCACCCCGA 157763 ||||||||| ||||| Sbjct 47163 ATCCTGTCATCCCGA 47177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547707139139160