Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq5733 493 4e-135 >seq5733 Length=57551 Score = 493 bits (546), Expect = 4e-135 Identities = 703/981 (72%), Gaps = 14/981 (1%) Strand=Plus/Plus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 ||||||||||| |||||||| || || ||||| |||||||| ||||| | || | | | Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 40933 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGAT 17954 || | ||||| | ||||||||| || | || | ||| | | |||| ||| Sbjct 40934 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGAT 40993 Query 17955 TGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 18014 |||||||||||||| || || | ||||| |||||||| | || | || || | | Sbjct 40994 TGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAAC 41053 Query 18015 CATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGTTAAA 18073 || || | || ||||| ||||| |||||||| |||| | | | || ||||| || Sbjct 41054 CAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAG-TTGTTGAA 41112 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 || || || |||||||| | | |||||||| || || || || || || || || || Sbjct 41113 ACTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGT 41172 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTT--CTGAGACTCAAGCTCAGTC-GTTTC 18190 ||||||||||| || ||||| || || ||||| | || || | || || ||||| Sbjct 41173 TTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCT---TCAGTTTC 41229 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 | || | || || |||||| |||||||||||| |||||||| |||||| || Sbjct 41230 ACGGATTAAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAA 41289 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 || || |||||||| ||||||||| || |||||||| || |||||||| |||||||| Sbjct 41290 CACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAA 41349 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| || || Sbjct 41350 TACTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACC 41409 Query 18371 TTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGC 18430 |||||||| || ||||| | ||||||| | || || |||||||| || || |||| Sbjct 41410 TTGTCCAATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGC 41469 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 || ||||||| || ||||| |||| | || ||||||||||||| ||||||||||| Sbjct 41470 TACGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA 41529 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 || | || | | ||||| || || | ||||| || || || ||||| || | Sbjct 41530 GCAAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAG 41589 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||||||||| | | ||||||||||| | |||||||||||||| ||| || |||||||| Sbjct 41590 CCACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGA 41649 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 || | | ||| |||| || ||||||||||| || | | | ||| | || || Sbjct 41650 ACTAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGG 41709 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA--AAAATGC- 18727 ||||| |||||||| || || || ||||| || || | || || || | || || Sbjct 41710 TTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCT 41769 Query 18728 TGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCG 18787 ||||||| ||||| | || |||||||| | || || ||||| || | ||| | || Sbjct 41770 TGTAGCT---GTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACG 41826 Query 18788 GTTGTTTGTACTCGTAACCCA 18808 ||| | ||| || || | ||| Sbjct 41827 GTTTTCTGTGCTAGTGATCCA 41847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151307886302994