Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq5733 713 0.0 seq225 601 4e-167 >seq5733 Length=57551 Score = 713 bits (790), Expect = 0.0 Identities = 733/961 (76%), Gaps = 10/961 (1%) Strand=Plus/Plus Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240 || || ||||||||||| |||||||| |||||||| ||||||||||| | | |||| ||| Sbjct 40880 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 40939 Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300 |||| || ||| ||||| ||||| | ||||||||| |||| ||||| | || |||||| Sbjct 40940 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGATTGGTTG 40999 Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATA 103360 |||||||| ||||| | ||| || ||||| || ||||||||||| || || ||||||||| Sbjct 41000 AAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATA 41059 Query 103361 CCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCG 103420 || || ||||| | ||||||||||| ||| Sbjct 41060 CCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTCGCG 41119 Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 ||||||||||| ||||| || |||||||| || || |||||||||||||| || ||||| Sbjct 41120 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 41179 Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCA--GT-TTCAGTCGTCTCACGAACC 103537 ||||||||||| |||||||| ||||| |||| | || |||||| ||||| | Sbjct 41180 TCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTT---TCACGGATT 41236 Query 103538 AGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCA 103597 | || || ||||| |||||||||||||||||||| | || ||||| || || ||| Sbjct 41237 AAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCA 41296 Query 103598 GCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGC 103657 ||||| || ||| ||||| |||||||| |||||||| ||||| |||||||| || | | Sbjct 41297 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 41356 Query 103658 ATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCA 103717 ||| ||||||| || || |||||||| ||||||||| |||| ||||| |||||| ||| Sbjct 41357 ATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCA 41416 Query 103718 AAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAG 103777 | ||||| || ||||||||||| || || || || || ||||| ||| | || || | Sbjct 41417 ATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 41476 Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837 ||||| || ||||| || | ||||||| | |||||| ||||||||||| || ||| || Sbjct 41477 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA-AG 41534 Query 103838 ATGC--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACT 103895 | | | | | |||||| ||||||||||||||| ||||||||||||| || ||||||| Sbjct 41535 CTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACT 41594 Query 103896 CATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGG 103955 | || | ||| || |||||||||| || |||||||||| |||||| ||||| || | Sbjct 41595 CGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAG 41654 Query 103956 GAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCAC 104015 ||| ||||||||| | ||| |||||||| ||||| | ||||| ||||| || ||||||| Sbjct 41655 GAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCAC 41714 Query 104016 GAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCAGATGGTTG 104075 | || || |||||||| || ||||||||||| | |||||| | |||||||||| | || | Sbjct 41715 GGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAG 41774 Query 104076 CCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTG 104135 | | || | ||||||||||| | |||||||||||||| | || | |||||| | || Sbjct 41775 CTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTG 41834 Query 104136 T 104136 | Sbjct 41835 T 41835 >seq225 Length=49998 Score = 601 bits (666), Expect = 4e-167 Identities = 749/1021 (73%), Gaps = 4/1021 (0%) Strand=Plus/Minus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | || ||||| || | ||| || ||||| || || |||||||| |||||||| ||| Sbjct 38841 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 38782 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 || || || |||| ||| | | | ||||||||| |||| ||| || || |||||| Sbjct 38781 TGGTCTTGTGCAGCCATCCACGATCTAATACCTTCATTTAATAAGATATTTTTAGTGTAG 38722 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || || || || ||||||||||| || || | | |||||| ||||| || || || || Sbjct 38721 AAAGTTTCAAATTCTGGATCTTCAGCCGCACGAAGCTCTTGAGATACGAAATCGTATGCT 38662 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 | | || | || | ||||| |||||| | ||||||||||| | ||| | |||||| Sbjct 38661 CTTAAATTTAATGCTAAACCAACAATACCAAAAGAACTTGTCCATAAACCTGTTACAGGA 38602 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | ||| |||||||| | ||| | || || || || | |||||| |||||| Sbjct 38601 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTCGAGAAAGCTACACCAAAAATTTGA 38542 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 |||||||| | || ||||| ||||| |||||||| ||||| |||||| | || Sbjct 38541 GACCAGAATCTATTCGCTGTTACCATCGAATAAGTTTCTTCTGATTGTGTTGGTGTAAAC 38482 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || ||| |||||||| ||||||||||||| | || || || || || ||| | || Sbjct 38481 GCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTGTATTTTCTACTGTGGCTCCA 38422 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || ||||| || | | ||| ||||| | || ||||| |||||||||||||||||||| Sbjct 38421 TGAATTGCAGATAATAATGCACCTCCTAAAATCCCTGCTACACCCATCATATGGAATGGA 38362 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || || |||||||||||||| || |||| ||| | || |||| || || |||||||| Sbjct 38361 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAAAATCGGAAAATAGCTGCAACC 38302 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || || ||||||||||| | ||||| |||||||| || | || ||| Sbjct 38301 CCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAGGATAAATTAAGAATACAGAA 38242 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 ||||| || || ||||| |||||||| ||||| || ||||| |||||||| || | | Sbjct 38241 ACAAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTGTATGGACGAATACCTACAAGA 38182 Query 102364 CTAGCCAACTCGAATTGACG-AAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGC 102422 | ||| | |||||||||||| || || ||| ||||| | ||||||||||||| || || Sbjct 38181 CGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAAACCAAATGCACCGTGTAGTGC 38123 Query 102423 CACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGG 102482 | ||||||||| | ||| |||| ||| | ||| | |||||||||||| |||||||| Sbjct 38122 TATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGAAATCTCCTTGCGCTTCAGG 38063 Query 102483 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542 ||||| | || || | || ||||||||| || || || ||||| || || | || Sbjct 38062 TCCCCATAATAAAATTAATGAGTGACCCATACTGTTTGCTGGTGTTGATACTGCTACAGT 38003 Query 102543 AAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGC 102602 | ||| ||| ||||| | ||| ||| || | || || |||||||| || ||| | Sbjct 38002 TAAGAAGTTACATCCTTCTAAATAAGAAGATGCTAATCCATGAGTATACCAAGATGTAAC 37943 Query 102603 AAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT-GGGAAAAAGAAGTA 102661 ||| ||||| || || | ||| || |||| ||| ||| | || || ||||| || || | Sbjct 37942 AAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAATGCGGTTGGGAATAATAAA-A 37884 Query 102662 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAA 102721 | || |||||||| | ||| || || ||||||||||| | ||||||||| | | ||||| Sbjct 37883 GGCCTGACCAACCAATAAACACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCAA 37824 Query 102722 A 102722 | Sbjct 37823 A 37823 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 || ||||| ||||| || | || || || || | | |||||| || || | ||||||| Sbjct 19050 GGATATGCTACGCAAGTTAATACGAATCCCTCTGCAACTTGATCATCTTCTAAAAAGGAT 18991 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 || || |||||| | |||||| ||| ||||||||||| ||||| | ||| Sbjct 18990 TGCTCAGATTGATCAATAGTACCACCAACAACTCGGCCAGCACAAGTTGAACAAGAACCT 18931 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 | | || |||||||| || |||| || ||| ||||||||||||| ||| |||| Sbjct 18930 GATCTGCAAGAATAAGGTAGTTCAAATCCATTTTCTTCAGCAGCGTCTAAAATGTATTCG 18871 Query 103004 TCATCCTCACAGGTGATA 103021 ||||| |||||| |||| Sbjct 18870 TCATCATCACAGTCGATA 18853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633467266399080