Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq5733 544 2e-150 >seq5733 Length=57551 Score = 544 bits (602), Expect = 2e-150 Identities = 717/990 (72%), Gaps = 8/990 (1%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || ||||||||||| ||||| || || ||||| || || | || | | |||||| Sbjct 40880 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 40939 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | |||||||||||| ||||||||||| | || | | | | | | |||||||| Sbjct 40940 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGATTGGTTG 40999 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 ||||||||||| || ||||| || ||||| ||| || ||||| |||| ||||| ||| Sbjct 41000 AAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATA 41059 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 |||||||| ||||| ||||| | ||||| || | | ||| || || || || || || Sbjct 41060 CCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTCGCG 41119 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 ||||||||||| | || ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 41120 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 41179 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACC---TCTTCAGTCGTCTCACGAATG 21833 ||||| || || |||||||| ||||| || || |||||||| ||||| || Sbjct 41180 TCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTT---TCACGGATT 41236 Query 21834 AGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCG 21893 | || || || || ||||||||||||| ||| ||| |||||||| || || Sbjct 41237 AAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCA 41296 Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || ||||| ||| || || || ||||||||||| ||||| || || ||||| || | | Sbjct 41297 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 41356 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 ||| ||||||| || || || || || || |||||| ||||||| || || |||||| Sbjct 41357 ATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCA 41416 Query 22014 AACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAG 22073 | || ||||| | ||| || |||| || || || || ||||| ||| | || || || Sbjct 41417 ATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 41476 Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-A 22132 ||||| || | |||||||| || |||||||||||||| || |||||||||| ||||| Sbjct 41477 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGT-AGCAAGC 41535 Query 22133 GACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTC 22192 || || | | |||||| ||||| |||||| | ||||| |||||||| ||||| || Sbjct 41536 TACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACTC 41595 Query 22193 ATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGG 22252 || | | ||||||||||||| |||||||||||| | || || || ||| || || Sbjct 41596 GTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAGG 41655 Query 22253 AACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCG 22312 || || || |||| || |||||||| || || || || || ||||| || ||||| || Sbjct 41656 AATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACG 41715 Query 22313 GATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC 22372 ||| |||||||| || || || ||||| | | || ||||| || || || ||||||| Sbjct 41716 GATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGC 41775 Query 22373 GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 | | | || ||||| | || |||||||| || | || | |||||| | || Sbjct 41776 TGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTGT 41835 Query 22433 AGAGGTGACCCAGGAACAAAACTGCTCCCA 22462 |||| ||| || || || ||||||| Sbjct 41836 GCTAGTGATCCAAGAGCAGAAGCGCTCCCA 41865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146197841376780