Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5733 661 0.0 seq225 531 6e-146 >seq5733 Length=57551 Score = 661 bits (732), Expect = 0.0 Identities = 740/982 (75%), Gaps = 8/982 (1%) Strand=Plus/Plus Query 124012 AGGTGCTGTTAATGCAACCTGTGTAGACTCAGCAGAT---GCTAGGTCTAGTGGGAAGTT 124068 ||| || |||||||||| || | ||| || |||| |||| ||||| |||||||| Sbjct 40837 AGGAGCGTTTAATGCAAC-TG-GAAGAA-CATTAGATACGGCTAAATCTAGAGGGAAGTT 40893 Query 124069 GTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTTGCTCTGTTTAGAACATCACC 124128 ||| || || | ||| ||||| ||||||||||| || | || | ||| | || ||| | Sbjct 40894 GTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATAATGTCAGC 40953 Query 124129 CCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGATTGGTTAAAGTTGAAACCATT 124188 ||| || || | || | | |||||||||||||||||| ||||||||||| || Sbjct 40954 CCAAGTGTTGATCACACGACCTTGACTATCAACAACTGATTGGTTGAAGTTGAAACCGTT 41013 Query 124189 CAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATACAACAGGGAA 124248 ||||| |||||||| || | | ||| | || |||||||| | || |||||| || | Sbjct 41014 TAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACAACTGGCCA 41073 Query 124249 AACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAG 124308 | |||| ||||||||| | | | |||||||||||| || || |||||||| | Sbjct 41074 TGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTCGCGTATTGGAAGATTAA 41133 Query 124309 ACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTT 124368 ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || Sbjct 41134 ACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCGAATTT 41193 Query 124369 ATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAG 124428 ||||| ||||| || | ||| ||||| | ||||| | |||||| ||||| Sbjct 41194 GTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCACGGATTAAACTAGATGTTACAAG 41253 Query 124429 AGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTG 124488 |||||| ||||| || |||||||||||| || |||| || || || || ||||| || Sbjct 41254 AGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCAGCAACACCAGCCATATG 41313 Query 124489 GAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACC 124548 ||| || ||||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 41314 GAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAACATGAAGTTGAAAGTACC 41373 Query 124549 TGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAA 124608 || ||||| | ||||||||||||||||| ||| || |||| |||||| |||||||| Sbjct 41374 AGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCAATTGGGTAAACTAAGAA 41433 Query 124609 TACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCC 124668 ||| || |||| |||| |||||| ||||| |||| || | |||||||||||||| || Sbjct 41434 TACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAAATCCAAGGACGCATCCC 41493 Query 124669 TAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACC-AATAAGGAAGT 124727 ||| | ||| |||||||| | | ||||||||| | | ||| ||||| ||||| Sbjct 41494 TAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAAGCTACACCTAATAA-GAAGT 41552 Query 124728 GGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTT 124787 | || | ||| | || ||||||||||| || || | ||| || || |||| || |||| Sbjct 41553 GTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACTCGTCTACAGACGCAGCTT 41612 Query 124788 CCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGA 124847 |||| | |||||||||||| | || |||||||| || |||| ||||||||| | || Sbjct 41613 CCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAGGAATAACTGCACCTGTGA 41672 Query 124848 TGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGA 124907 | |||||||| || ||||| | || || || |||||||| | ||| || |||||||| | Sbjct 41673 TAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGGATACCATCGATATCTA 41732 Query 124908 CAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAA 124967 | ||||||||||| || || || | |||||| || || ||||| | ||| ||| | Sbjct 41733 CTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCTGTTAATAATGTTGGGA 41792 Query 124968 TCATTAGAACACCAAACCAACC 124989 |||||| |||||| |||||||| Sbjct 41793 TCATTAAAACACCGAACCAACC 41814 >seq225 Length=49998 Score = 531 bits (588), Expect = 6e-146 Identities = 752/1051 (72%), Gaps = 27/1051 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || ||||||||||||||||| ||||| ||||| Sbjct 38839 TTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGTTG 38780 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATT-AAGAAGAATGTTCTTCGTATAGA 122984 ||| | | |||||| | ||| || |||||||| || |||| | || || || |||| Sbjct 38779 GTCTTGTGCAGCCATCCACGATCTAATACCTTCATTTAATAAGA-TATTTTTAGTGTAGA 38721 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 |||| || || ||||| ||||| || || | | |||||||||||| || |||||||||| Sbjct 38720 AAGTTTCAAATTCTGGATCTTCAGCCGCACGAAGCTCTTGAGATACGAAATCGTATGCTC 38661 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | | || | ||||| ||| || ||||| | ||| |||||| | ||| | ||||||| Sbjct 38660 TTAAATTTAATGCTAAACCAACAATACCAAAAGAACTTGTCCATAAACCTGTTACAGGAA 38601 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 | || ||||| | ||| || | | | |||||| || || || | |||||| || || | Sbjct 38600 CAAATAACATGAAGAAATGAAGCCAACGTTTGTTCGAGAAAGCTACACCAAAAATTTGAG 38541 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 |||||||||| |||||||| | ||| ||||||||||||| ||||| || || | Sbjct 38540 ACCAGAATCTATTCGCTGTTACCATCGAATAAGTTTCTTCTGATTGTGTTGGTGTAAACG 38481 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| || | ||| | | | | || |||||| | | || Sbjct 38480 CACGGAATGT----GTTTGCAGCATCAC--CA---------------TCTTCAAATAGTG 38442 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 | || | ||||| || |||||||| ||| ||| |||||| || |||| || ||||| | Sbjct 38441 TATTTTCTACTGTGGCTCCATGAATTGCAGATAATAATGCACCTCCTAAAATCCCTGCTA 38382 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 |||||||||| || |||||||| | ||| ||| ||||||||||||| |||||| | | Sbjct 38381 CACCCATCATATGGAATGGATTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAAA 38322 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCT-GACCTAGT 123463 | || || || ||||| || || || ||| |||||||||||||| |||| | ||||| Sbjct 38321 ATCGGAAAATAGCTGCAACCCCAAAACTTGGAGCGAAGAACCAACT-TGCTTGTCCTAGA 38263 Query 123464 GGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTG 123523 ||||| || | || | | || || || ||| |||||||||| | ||||||| Sbjct 38262 GGATAAATTAAGAATACAGAAACAAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTG 38203 Query 123524 TAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTC-TGAGCATGAAACCTATGAG 123582 || || | ||| |||||||| | |||||||| ||||| | | | || ||| || || | Sbjct 38202 TATGGACGAATACCTACAAGACGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAA 38144 Query 123583 TCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAAC 123642 ||||| | || |||| ||||| ||| ||||| || || | ||| | ||||||| Sbjct 38143 ACCAAATGCACCGTGTAGTGCTATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGT 38084 Query 123643 GAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACC 123702 ||| |||||| |||||||||||||| | || || | |||||||| || | Sbjct 38083 GAAATCTCCTTGCGCTTCAGGTCCCCATAATAAAATTAATGAGTGACCCATACTGTTTGC 38024 Query 123703 AGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACC 123762 ||||| || |||||| | ||||||||||| ||| || | ||| |||||||| | || Sbjct 38023 TGGTGTTGATACTGCTACAGTTAAGAAGTTACATCCTTCTAAATAAGAAGATGCTAATCC 37964 Query 123763 ATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATA 123822 ||| |||||||| |||||||| || || || ||| ||||| ||||| | || ||| | Sbjct 37963 ATGAGTATACCAAGATGTAACAAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAA 37904 Query 123823 CGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAA 123882 || || | | |||||| || ||||| || || || || |||||||||| ||||| Sbjct 37903 TGCGGTTGGGAATAATAAAAGGCCTGACCAACCAATAAACACGAAACGATCTCGTTTTAA 37844 Query 123883 CCAGTCGTCAAGAACATCAAACCAACCTCTT 123913 |||||| || | | ||||| |||||||| Sbjct 37843 CCAGTCATCGACTAAGTCAAATAAACCTCTT 37813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578956053504520