Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5733 729 0.0 seq225 455 4e-123 seq4011 86.0 8e-12 >seq5733 Length=57551 Score = 729 bits (808), Expect = 0.0 Identities = 735/949 (77%), Gaps = 10/949 (1%) Strand=Plus/Plus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || || || ||||| | |||||| || || || | || | | |||||||||||| | Sbjct 40886 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATA 40945 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | ||| ||||||||||||| ||||||||| || ||||| || || || ||||||||| Sbjct 40946 ATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGATTGGTTGAAGTTG 41005 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 |||||||| | || || ||||| || |||||||| || || |||||||| || ||| Sbjct 41006 AAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATACCTACA 41065 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||||||||| | ||||||||| || | ||||||||||||||| || |||||| Sbjct 41066 ACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTCGCGTATTGG 41125 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 ||||| ||||| || ||||| || ||||| || ||||||||||| || ||||||||||| Sbjct 41126 AAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGT 41185 Query 27046 CCGAACTTATAACCATAGTT--CTGTGACTCAGT-TTCAGTCGTCTCACGGACGAGTGAA 27102 ||||| || ||||| ||||| | | || | || |||| || ||||||| | | Sbjct 41186 CCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCA---GTTTCACGGATTAAACTA 41242 Query 27103 GATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACA 27162 ||||| || ||| |||||||||||| ||| | ||||||||| || || ||||||||| Sbjct 41243 GATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCAGCAACA 41302 Query 27163 CCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAG 27222 || ||| ||||| ||||||||||| || ||||||||||| |||||||| | |||| || Sbjct 41303 CCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAACATGAAG 41362 Query 27223 TTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGA 27282 || ||||||||||| ||||| | ||||||| |||| ||||| |||||| || | || Sbjct 41363 TTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCAATTGGG 41422 Query 27283 TAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCAT 27342 || || | |||||||||| || ||||| |||||||| || | ||||| | ||||| Sbjct 41423 TAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAAATCCAA 41482 Query 27343 GGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAG--ATGC 27400 |||||||| |||||||| || |||||||| ||||||||||| | |||| || | | Sbjct 41483 GGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGT-AGCA-AGCTACAC 41540 Query 27401 CGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGA 27460 | | | |||||| || ||||| |||||| ||||||||||||| || | |||||| || | Sbjct 41541 CTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACTCGTCTA 41600 Query 27461 GTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAA 27520 || || |||||||| | |||||||||||| | ||| || || || ||||| || | || Sbjct 41601 CAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAGGAATAA 41660 Query 27521 CTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATAC 27580 ||||||| | || |||||||| || || | |||||| ||||| || |||||||| |||| Sbjct 41661 CTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGGATAC 41720 Query 27581 CGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTA 27640 | || ||||| || || |||||||||||||| |||| ||||||||| || |||| || Sbjct 41721 CATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCTGTTA 41780 Query 27641 ACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTT 27689 | | |||||||||||| | |||||||||||||| | || |||||||| Sbjct 41781 ATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 41829 >seq225 Length=49998 Score = 455 bits (504), Expect = 4e-123 Identities = 694/981 (71%), Gaps = 12/981 (1%) Strand=Plus/Minus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGG----AGGCCATTGTTCA 23484 ||| ||||| ||||||||||| | || || |||| |||| | || | || | Sbjct 38797 AAAATTTTCATGTGGTTGGTC--TTGTG--CAGCCATCCACGATCTAATACCTTCATTTA 38742 Query 23485 ACAAAATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTT 23544 | || |||||||| |||||||| || ||| | ||||||||| ||||||| ||||| Sbjct 38741 ATAAGATATTTTTAGTGTAGAAAGTTTCAAATTCTGGATCTTCAGCCGCACGAAGCTCTT 38682 Query 23545 GACTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGA 23604 || || ||||| || || | | ||| | || | |||| || |||| |||| Sbjct 38681 GAGATACGAAATCGTATGCTCTTAAATTTAATGCTAAACCAACAATACCAAAAGAACTTG 38622 Query 23605 CCCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAA 23664 ||| | ||| | ||||||||||| ||||| ||||| || | |||||| || || | Sbjct 38621 TCCATAAACCTGTTACAGGAACAAATAACATGAAGAAATGAAGCCAACGTTTGTTCGAGA 38562 Query 23665 ACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCT 23724 | || || || || ||||| ||||| || | ||| ||||| ||||||||||| || || | Sbjct 38561 AAGCTACACCAAAAATTTGAGACCAGAATCTATTCGCTGTTACCATCGAATAAGTTTCTT 38502 Query 23725 CCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTG 23784 | || || | ||||| || |||||||| || ||||||||| | |||| Sbjct 38501 CTGATTGTGTTGGTGTAAACGCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTG 38442 Query 23785 TATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAA 23844 |||| || || || |||||||||| ||||| | | ||| ||||| | || || || | Sbjct 38441 TATTTTCTACTGTGGCTCCATGAATTGCAGATAATAATGCACCTCCTAAAATCCCTGCTA 38382 Query 23845 CTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGA 23904 | |||||||||||||| || || || ||||||||||| || || || | ||| | | | Sbjct 38381 CACCCATCATATGGAATGGATTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAAA 38322 Query 23905 ACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAG 23964 | | |||||| || ||||| || ||||| || || ||||||||| || ||||| | || Sbjct 38321 ATCGGAAAATAGCTGCAACCCCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAG 38262 Query 23965 GATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGT 24024 |||| || | ||||||||| || ||||| |||||||| ||||| || ||||| || |||| Sbjct 38261 GATAAATTAAGAATACAGAAACAAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTGT 38202 Query 24025 AGGGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTG 24084 | ||||| || || | ||||| || | || || |||||||| || || || | Sbjct 38201 ATGGACGAATACCTACAAGACGAGCGATCTCGAATTGACGTAAACAGAATCCAATTAAAC 38142 Query 24085 CAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCG-TTGA 24143 |||| |||||||| || || | ||| | ||| | || |||| ||| ||||| || ||| Sbjct 38141 CAAATGCACCGTGTAGTGCTATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGA 38082 Query 24144 AAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCA 24203 || || ||||| | ||||| ||||| | || || | || ||||||||| || || Sbjct 38081 AA-TCTCCTTGCGCTTCAGGTCCCCATAATAAAATTAATGAGTGACCCATACTGTTTGCT 38023 Query 24204 GGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCA 24263 || || || || ||| | || | |||||| || || | ||| ||| || | |||| Sbjct 38022 GGTGTTGATACTGCTACAGTTAAGAAGTTACATCCTTCTAAATAAGAAGATGCTAATCCA 37963 Query 24264 TGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAA 24323 || || |||||| |||||||||| || || || | ||| || |||| |||||| | Sbjct 37962 TGAGTATACCAAGATGTAACAAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAAT 37903 Query 24324 GCAG-TGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAAC 24382 || | |||||| || || || || |||||||| | ||| || || ||||| ||||| | Sbjct 37902 GCGGTTGGGAATAA-TAAAAGGCCTGACCAACCAATAAACACGAAACGATCTCGTTTTAA 37844 Query 24383 CCAGTCGTCCAAGATGTCAAA 24403 |||||| || | | |||||| Sbjct 37843 CCAGTCATCGACTAAGTCAAA 37823 >seq4011 Length=2654 Score = 86.0 bits (94), Expect = 8e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 53750 ACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACTGAGCTA 53806 ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 2347 ACGGAGTCGAACCGACGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTA 2403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665445727403320