Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3524 206 3e-48 seq225 122 1e-22 seq2878 93.3 5e-14 >seq3524 Length=35516 Score = 206 bits (228), Expect = 3e-48 Identities = 596/904 (66%), Gaps = 25/904 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAAC 75185 || |||| || | || || || ||| |||| || || |||||| ||| || |||| Sbjct 12045 CGAGACTTCGACTATGACTATTTCGGTTTCAAGACGCTGGAGAAGTCCTACCTGCTCAA- 11987 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | | || |||||| ||||||| || ||| ||||| ||||||| || || || || | Sbjct 11986 -GATGGACGGCATCGTCATGGAGCGACCCCAGCACATGATCATGCGCGTAGCCATTGGAA 11928 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 |||| ||| ||| | || | | | ||||| ||| | |||||||| | | Sbjct 11927 TCCATAAGGAGGACGTGGACGCGGCGATTGAGACCTACAATCTCATGTCCCAGAAGCTCT 11868 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTT 75365 ||| |||||| || || || |||||||| || || || || | |||||| | ||| | Sbjct 11867 TCACTCACGCCACGCCTACACTCTTCAACGCCGGCACGCCGCGGCCGCAGCTCTCCTCCT 11808 Query 75366 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 75425 |||||||| | ||| ||||||||||| ||| |||||||||||| ||||| | | | | Sbjct 11807 GCTTCCTTCTGACCATGAAGGAGGACTCCATCGACGGTATCTATGACACTCTCAAGCAAT 11748 Query 75426 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 75485 ||||| ||||| |||| || || || ||||| | |||||| | | | || Sbjct 11747 GTGCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTCTCGATCCATAACATCCGGGCGC 11688 Query 75486 ATAAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 75543 | | ||||| || || || |||| || || | || || | || ||||| || Sbjct 11687 GTGA--CTCGTACATCCGTGGCTCAAACGGGACCTCCAACGGCATCGTGCCCATGCTGCG 11630 Query 75544 CGTATTTAACGCCACAGCGCGCTATGTAAATCAAG--CGGGGC-GTCGCAAGGGGTCCAT 75600 || || |||| ||| || ||||| || | || | ||||| |||||||| || | Sbjct 11629 TGTCTTCAACGACACGGCCCGCTACGTGGACCAGGGTGGGGGCAAGCGCAAGGGCTCTTT 11570 Query 75601 CGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAA 75660 ||| ||||| |||| || ||||| ||||||||| | |||||||| || | || || Sbjct 11569 CGCCATCTACCTGGAGCCCTGGCACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAA 11510 Query 75661 CCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 ||| || | || || ||| | || | || | |||| |||| || || || Sbjct 11509 CCACGGCAATGAGCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGACGCCTGATCT 11450 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 |||||| |||| || ||| | | || | |||||||| ||||| || || || || Sbjct 11449 GTTCATGCAGCGCGTGGAGAACGACGGCGACTGGTCTCTGTTCTGCCCCAACGAGTGCCC 11390 Query 75781 AGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGC-CCTCTACACAAAGTATGAAGAGG 75839 || || | |||| || ||||| ||| |||| || || | ||| | ||| | Sbjct 11389 TGGCCTGGCGGACGTATGTGGAGAGGAATTT-AAGCAGCTGTATGAGACGTACG-AGAAG 11332 Query 75840 AG-GGTAGAGC---CAATGCGA--CTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCA 75893 || || | || ||| | || | ||||| || | |||| || | | Sbjct 11331 AGTGGCAAGGCGCGCAAGGTGATCAAGGCCCAGCAGCTGTGGTTT-----GCGGTGTTGG 11277 Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 | |||||| |||||| || || || |||||||| | ||||||||| || || ||| Sbjct 11276 ACTCACAGGTGGAGACGGGCACGCCCTATATGCTCTTCAAGGATGCCTGCAATCTCAAGT 11217 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 ||||| ||||| ||||| |||||| || || || |||||||| || | |||| Sbjct 11216 CGAACCAGCAGAATCTGGGAGTTATCAAGTCTTCCAACCTGTGCACGGAGATCATCGAGT 11157 Query 76014 ACAC 76017 | || Sbjct 11156 ATAC 11153 >seq225 Length=49998 Score = 122 bits (134), Expect = 1e-22 Identities = 323/491 (66%), Gaps = 8/491 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| || ||||| | | ||||| || || |||| ||||| |||| | || Sbjct 15294 TGATGTTGCTGGTATTGATGAAGTTAAAGAAGAGTTTCAAGAAATTGTTACTTTTTTAAA 15235 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | ||||||| | ||| | | |||||| || ||||| ||| | | | | || Sbjct 15234 GAAACCCGAACGTTATACTCGTGTTGGTGCTAAAATCCCAAAAGGTGTTTTATTATCAGG 15175 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 ||||| ||||| || || | | || || || || ||||| |||| || || Sbjct 15174 CCCTCCAGGAACGGGTAAAACTTTATTAGCTAAGGCTATTGCAGGTGAGGCAAAAGTTCC 15115 Query 175371 ATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAG 175430 || | ||||| || || | ||||| ||| | ||||||||| | || || ||| Sbjct 15114 CTTTTTTAGTTGCTCCGCATCAGAATTTGTAGAGTTATTTGTTGGTATAGGAGCATCAAG 15055 Query 175431 GGTTCGCGATCTCTTTGAAATCGCCC----GCGAAAATCAACCATGTATTGTCTTCATTG 175486 |||| ||||| ||| || || | || |||| ||| |||||| ||||||||| Sbjct 15054 AATTCGTGATCTTTTT--AAGCGAGCTAAAGCAAAAAC--ACCTTGTATTATCTTCATTG 14999 Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGA 175546 |||| ||||| || || || | ||| | || |||| | | | |||||||| Sbjct 14998 ATGAAATTGACGCAGTTGGTAGACAAAGAGGCTCTGGAGTTGGTGGTGGGAATGACGAAC 14939 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 | |||||||| | ||||| || | ||||| ||||| || ||||| | | | | ||| Sbjct 14938 GCGAACAAACGTTAAATCAGCTCTTAACCGAAATGGACGGATTTGAAACTAATAATGGTG 14879 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGG 175666 || | || ||||| || || || ||||| ||||| | || || | | | |||| Sbjct 14878 TTATTGTAATTGCAGCTACAAACCGCGTAGATATTTTAGACTCAGCTTTATTAAGACCGG 14819 Query 175667 GTCGTTTTGAT 175677 ||||||||||| Sbjct 14818 GTCGTTTTGAT 14808 >seq2878 Length=6153 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 65025 GAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCT 65084 ||||||| | ||||| | | |||| ||| |||| ||| |||||||||||||| Sbjct 5982 GAAGGCGCAGTGGGCCCTCAGGTGGTGCGACCGGAAGTACGCCTCTTTCGCCGAGCGCCT 6041 Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144 ||||||||||| |||||| ||||| || ||| ||||| |||||| | || | || Sbjct 6042 GATTGCGTTTGCGGCTGTGGAAGGTATATTTTTCAGTGGGTCGTTCTGCTCGATATTCTG 6101 Query 65145 GTTGAAGAAGCGGGGTCTCATGCC 65168 | |||||||| ||||| | ||||| Sbjct 6102 GCTGAAGAAGAGGGGTTTGATGCC 6125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596525968390880