Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq5733 612 2e-170 >seq5733 Length=57551 Score = 612 bits (678), Expect = 2e-170 Identities = 728/979 (74%), Gaps = 10/979 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 ||||| |||| ||||||||||| || || | ||| ||||| |||||||||||||| | Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 40933 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | |||| |||| || || | ||| | | ||||||||||||| Sbjct 40934 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGAT 40993 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| ||||| || ||||| | |||||||||||| || | || ||| | || ||||||| Sbjct 40994 TGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAAC 41053 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 || | || ||||||||| ||| ||| | ||||||||| | | | |||||| || Sbjct 41054 CAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 41113 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 || || ||||||||||| | |||||||| || || ||||| || || || || || Sbjct 41114 CTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 41173 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTT--CTGAGAC-TCTTCTTCAGTTGTCTCT 8247 ||||||||||| || || || ||||| ||||| | || || | ||||||||| || Sbjct 41174 TCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTT---TCA 41230 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 | ||||| | |||||| || | ||||||||||||||||||||| | |||||||| ||| Sbjct 41231 CGGATTAAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAAC 41290 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| || || || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct 41291 ACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAAT 41350 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || ||||||||||| || |||||||||||||||| |||||| ||||||||||| ||| Sbjct 41351 ACTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCT 41410 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 || |||| ||| || |||||||| ||||| | || |||| ||||||||| | ||| Sbjct 41411 TGTCCAATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCT 41470 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTA 8546 || | ||||| || | ||| ||||| ||||| | ||| ||||| | | |||||||| Sbjct 41471 ACGAAAATCCAAGGACGCATCCCTAAACGGTA-GCTAAGTTCCCATTCACGTCCCATGTA 41529 Query 8547 AGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACA 8605 || | || ||||| |||||| || | || | || || ||||| ||||| || | Sbjct 41530 GCAAGCTACACCTAATAA-GAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAA 41588 Query 8606 ACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGG 8665 |||||| |||| | ||||||||||||| || |||||||| | ||||||||||| | Sbjct 41589 GCCACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAG 41648 Query 8666 AAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAG 8725 || |||| || ||||| | ||| ||||||||||| || | | ||| || || || | Sbjct 41649 AACTAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTG 41708 Query 8726 GTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAG 8785 ||||||| ||||| |||||||| || || || || || || || || | ||| ||||| Sbjct 41709 GTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGC 41768 Query 8786 TAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGT 8845 | | ||| | ||| || || ||||||| ||| || |||||||||| || | | || Sbjct 41769 TTGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGT 41828 Query 8846 TGTTTGTACTTGTAACCCA 8864 | | ||| || || | ||| Sbjct 41829 TTTCTGTGCTAGTGATCCA 41847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615817357363720