Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq5733 729 0.0 seq225 607 9e-169 seq4011 89.7 6e-13 >seq5733 Length=57551 Score = 729 bits (808), Expect = 0.0 Identities = 757/989 (77%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 165760 TGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTT 165819 ||||| ||||||| ||| | || |||||| | |||||| | || |||||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 165820 GGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 165879 ||| | ||||| ||||| | || |||| || | |||||||||| |||| |||||| Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 165880 GCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTAT 165939 || || || || || || ||||| || ||||||||||| || ||||| || || | || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 165940 GGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTC 165999 || |||||||| ||| | ||||||||| |||| ||| ||||| |||||| | |||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 166000 TATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAA 166059 || || | |||||||| || || | ||||| ||||| || ||||||||||||| |||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 166060 CTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTG 166119 || || || || |||||| | | || | | ||||||||| ||||| |||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 41506 Query 166120 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCT 166179 |||||| |||| |||||||| ||||| | || |||| |||||| ||||| ||||| Sbjct 41505 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 41446 Query 166180 GCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCA 166239 || |||||||||| |||| || || | || |||||||| |||||||||| ||||| Sbjct 41445 GCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCT 41386 Query 166240 CTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTC 166299 | || || || || || ||||||| |||||| || |||||||| || ||||| ||||| Sbjct 41385 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 41326 Query 166300 ATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCT 166359 ||||| || ||||||||| || |||||||| || |||||||| ||| || |||||| Sbjct 41325 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCT 41266 Query 166360 ATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAA-AC--CGAATCC 166416 |||||||| | | || || ||| | | | | || |||||| || || ||| Sbjct 41265 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGCGTATCT 41209 Query 166417 CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCAT 166476 |||||||||||||| |||||||||||||||||||| |||||||||||||| || || Sbjct 41208 GCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 41149 Query 166477 GGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCAC 166536 |||||||| || ||||| |||||||||||||| ||||||||||| || | || ||| Sbjct 41148 GGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACAC 41089 Query 166537 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 166596 |||||| | ||||||||||| ||||| || |||||||| || || ||||| || || Sbjct 41088 TTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACT 41029 Query 166597 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 166656 |||||||| ||| | |||||||||||||||||||| || | ||||| |||| |||||| Sbjct 41028 ATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGT 40969 Query 166657 GTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCAT 166716 ||| | ||||| ||||| || || | ||||| |||| | | ||||||||||| ||||| Sbjct 40968 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 40909 Query 166717 GAGCGTAACGCACACAACTTCCCCCTCGA 166745 || |||||||| ||||||||||| || || Sbjct 40908 GAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 607 bits (672), Expect = 9e-169 Identities = 743/1009 (74%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 167024 TCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTT 167083 ||||||||||| | ||| | |||||||| || ||| |||| ||||| || ||| || || Sbjct 37833 TCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTA 37891 Query 167084 TTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGT 167142 ||||| || || | |||||| |||| || ||| | || || || ||||| || || | Sbjct 37892 TTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 37951 Query 167143 TGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCA 167202 ||||||||||||||| | || || |||| | || || ||||| | |||| ||| Sbjct 37952 TGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCA 38011 Query 167203 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCT 167262 || || |||||| | ||||||||| || ||| || | ||||||| |||||| | Sbjct 38012 GTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCG 38071 Query 167263 CAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 167322 ||||| |||||| | ||||| ||| |||| ||| | ||||||||| | || || ||| Sbjct 38072 CAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACAC 38131 Query 167323 GGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCGCCTGATTGG 167381 || || |||| | | ||||| ||| || || || || || || | ||||| || | || Sbjct 38132 GGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGG 38190 Query 167382 TATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTT 167441 ||| ||||| ||||| || ||||| |||||||| |||||||| || || ||| || || Sbjct 38191 TATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATT 38250 Query 167442 CCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGC 167501 | | | ||||| || || ||| || |||||||| || || || || || || || Sbjct 38251 CTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGC 38310 Query 167502 CATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCA 167561 || |||||||| | | ||| | ||||| ||||| ||||||||||| |||||||| || Sbjct 38311 TATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 38370 Query 167562 TATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTAC 167621 |||||||||||||||||| || | || |||||||| | |||||||| ||||| | || Sbjct 38371 TATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCAC 38430 Query 167622 AGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTC 167681 |||||| ||||| | | |||||||||||| |||||||| || || || | Sbjct 38431 AGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACC 38490 Query 167682 TACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTT 167741 || || |||||| |||||||| ||||| ||||| || ||||||||||||| || || Sbjct 38491 AACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTT 38550 Query 167742 CGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTAT 167801 || | |||||| |||||||| |||||||||||||| |||||||| ||||| || | Sbjct 38551 TGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAAC 38610 Query 167802 GGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGA 167861 || | |||||| || |||| || ||||| | || | ||| | | || ||||| Sbjct 38611 AGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGA 38670 Query 167862 TTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAA 167921 |||||| ||||||||| | | ||||| || |||||||| |||||||||||||| ||||| Sbjct 38671 TTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 38730 Query 167922 AAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGA 167981 ||| ||| | | ||||||||| || || | ||| | || | || ||||| ||||| Sbjct 38731 AAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGA 38790 Query 167982 GAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 || ||||| ||||||||||| ||| | ||||| || ||||| || ||| Sbjct 38791 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| |||| ||||||| |||||||||| ||||||| || Sbjct 43165 TCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTGGTTCAAGTC 43106 Query 18189 CTACCTGGGGAGTTGTTCAC 18208 | ||||||||||| ||||| Sbjct 43105 CAGCCTGGGGAGTT-TTCAC 43087 >seq4011 Length=2654 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 18008 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2411 CGGGGCCATAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGAC 2352 Query 18068 TCCG 18071 |||| Sbjct 2351 TCCG 2348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561206951724400