Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq5733 544 2e-150
>seq5733
Length=57551
Score = 544 bits (602), Expect = 2e-150
Identities = 717/990 (72%), Gaps = 8/990 (1%)
Strand=Plus/Minus
Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284
||||||| || || || ||| |||| || | |||||| | || | || ||||||
Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806
Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTT 41344
|| || | ||||| || | | | ||||||| || || || ||||| || |
Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746
Query 41345 GGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTAT 41404
| ||||| || || || |||||||| ||||| ||||| || ||||| || || || ||
Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686
Query 41405 GGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTC 41464
|| |||||||| || |||| || || |||| || ||| || || || | ||||||
Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626
Query 41465 TACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAA 41524
|||||| ||||||||||||| | | || || ||||| |||||||| ||||| | ||||
Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566
Query 41525 CTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACT 41583
|| ||||| |||||| | | || || ||||| |||||||||| || ||||||||
Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCT-ACATGGGACGTGAATGGGAACT 41507
Query 41584 TAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGC 41643
|||||| || |||||||| | || ||||| || || || | ||| ||||| || || ||
Sbjct 41506 TAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGC 41447
Query 41644 TGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCC 41703
|| |||| || ||| | ||||| || ||||||| || || ||||||| ||||||
Sbjct 41446 AGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCC 41387
Query 41704 CTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCT 41763
|| || || || || || ||||||| |||| | || ||||| || || ||||| |||||
Sbjct 41386 TTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCT 41327
Query 41764 TATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGC 41823
|||||| || || || ||| ||||| || || || |||||||| ||| ||| |||
Sbjct 41326 TATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGC 41267
Query 41824 TATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGA---GGTTTC 41880
|||||||||| || || || || | || ||||| |||||||| || ||
Sbjct 41266 TATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGCGTATC 41210
Query 41881 ACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCA 41940
||||| |||||||| || || ||||| ||||| |||||||| || || ||||| ||
Sbjct 41209 TGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 41150
Query 41941 CGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCA 42000
||| || ||||| || | ||||||||||| || || || || || || ||| | | ||
Sbjct 41149 CGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACA 41090
Query 42001 TTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTAC 42060
||||| | ||||| ||||| ||||||||||| ||||| |||| ||||| || |||
Sbjct 41089 CTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTAC 41030
Query 42061 CATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACA 42120
||||| || ||||| || ||||||||||| |||||||| | | | | | | || |
Sbjct 41029 TATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCG 40970
Query 42121 GGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCA 42180
||||||||||| |||||||||||| | |||||||| | | || | || || |||||
Sbjct 40969 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 40910
Query 42181 TGAGCGGAACGCACACAACTTCCCGCTTGA 42210
|| || ||||| ||||||||||| || ||
Sbjct 40909 CGAACGTAACGCGCACAACTTCCCTCTAGA 40880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146204240932104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |