Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq5733 544 2e-150 >seq5733 Length=57551 Score = 544 bits (602), Expect = 2e-150 Identities = 717/990 (72%), Gaps = 8/990 (1%) Strand=Plus/Minus Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284 ||||||| || || || ||| |||| || | |||||| | || | || |||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTT 41344 || || | ||||| || | | | ||||||| || || || ||||| || | Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 41345 GGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTAT 41404 | ||||| || || || |||||||| ||||| ||||| || ||||| || || || || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 41405 GGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTC 41464 || |||||||| || |||| || || |||| || ||| || || || | |||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 41465 TACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAA 41524 |||||| ||||||||||||| | | || || ||||| |||||||| ||||| | |||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 41525 CTCACCGTATTCCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACT 41583 || ||||| |||||| | | || || ||||| |||||||||| || |||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCT-ACATGGGACGTGAATGGGAACT 41507 Query 41584 TAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGC 41643 |||||| || |||||||| | || ||||| || || || | ||| ||||| || || || Sbjct 41506 TAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGC 41447 Query 41644 TGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCC 41703 || |||| || ||| | ||||| || ||||||| || || ||||||| |||||| Sbjct 41446 AGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCC 41387 Query 41704 CTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCT 41763 || || || || || || ||||||| |||| | || ||||| || || ||||| ||||| Sbjct 41386 TTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCT 41327 Query 41764 TATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGC 41823 |||||| || || || ||| ||||| || || || |||||||| ||| ||| ||| Sbjct 41326 TATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGC 41267 Query 41824 TATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGA---GGTTTC 41880 |||||||||| || || || || | || ||||| |||||||| || || Sbjct 41266 TATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGCGTATC 41210 Query 41881 ACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCA 41940 ||||| |||||||| || || ||||| ||||| |||||||| || || ||||| || Sbjct 41209 TGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 41150 Query 41941 CGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCA 42000 ||| || ||||| || | ||||||||||| || || || || || || ||| | | || Sbjct 41149 CGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACA 41090 Query 42001 TTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTAC 42060 ||||| | ||||| ||||| ||||||||||| ||||| |||| ||||| || ||| Sbjct 41089 CTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTAC 41030 Query 42061 CATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACA 42120 ||||| || ||||| || ||||||||||| |||||||| | | | | | | || | Sbjct 41029 TATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCG 40970 Query 42121 GGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCA 42180 ||||||||||| |||||||||||| | |||||||| | | || | || || ||||| Sbjct 40969 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 40910 Query 42181 TGAGCGGAACGCACACAACTTCCCGCTTGA 42210 || || ||||| ||||||||||| || || Sbjct 40909 CGAACGTAACGCGCACAACTTCCCTCTAGA 40880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146204240932104