Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq5733 565 7e-157 >seq5733 Length=57551 Score = 565 bits (626), Expect = 7e-157 Identities = 700/957 (73%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACC 42375 |||||| | || | || ||||| ||||| | ||||| || | | | ||||| Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 42376 ACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAA 42435 | ||| || || |||||||||| || || ||||| ||||| || ||||| || |||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 42436 CCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGC 42495 || || |||| || ||| | || || |||||||| ||| | ||||| || | ||||| Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 42496 AGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGG 42555 |||||| ||||| | || || || | | |||||||| | | ||||| ||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 42556 CTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCT 42615 || ||||| || || ||||| || || || || || |||||| | | ||| | | Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 41530 Query 42616 TACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTT 42675 ||| ||||||| |||||||||||| ||||| | |||||| | || ||||| || || Sbjct 41529 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 41470 Query 42676 GCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAA 42735 |||| ||| || || || |||||||| ||||||| ||| | || || ||| |||| ||| Sbjct 41469 GCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAA 41410 Query 42736 GGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTC 42795 ||| || || ||||| |||||| | || ||||| ||||| |||||||||||||| || Sbjct 41409 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTA 41350 Query 42796 TTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTA 42855 ||||| || ||||| |||||||||||||| || ||||||||| ||||||||| || || Sbjct 41349 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 41290 Query 42856 TTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGT 42915 |||||||| || || ||| |||||||| ||| |||||| || ||| | | | ||| Sbjct 41289 TTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 41230 Query 42916 GAAACGACTGAAAACGAAAGCCAA------AATTATGGCTACAAGTTCGGTCAAGAGGAG 42969 ||| |||||| ||| || | || || || ||||| ||||| ||||| || Sbjct 41229 GAA---ACTGAAGACG---GCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAA 41176 Query 42970 GAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCG 43029 || ||||| ||||| || || || || |||||||||||||| | ||||||||||| ||| Sbjct 41175 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCG 41116 Query 43030 TCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATT 43089 || || || || |||| |||||||| | || || ||||| ||||| || || Sbjct 41115 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATC 41056 Query 43090 TGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAAC 43149 ||||| ||| ||||||| || ||||||||||| |||||||| || ||||| ||||| ||| Sbjct 41055 TGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAAC 40996 Query 43150 CAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGT 43209 |||||| ||||||||| ||| || ||| ||| ||||||||||| ||| | || ||| Sbjct 40995 CAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 40936 Query 43210 GCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 || | | || | || || |||||||| || || || || |||||||| || ||| Sbjct 40935 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143522827251348