Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq5733 499 9e-137 >seq5733 Length=57551 Score = 499 bits (552), Expect = 9e-137 Identities = 718/999 (72%), Gaps = 14/999 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||| || || || ||||| || || ||||| |||||||| ||||| | || | | | Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 40933 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCA--TTAAC-ATCTACTACT 25993 || ||||| | | |||||||| || || | ||| | | || || ||| || ||| Sbjct 40934 GCACGGTTGATAATGTCAGCCCAAGT--GT-TGATCACACGACCTTGACTATCAACAACT 40990 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||| ||||| |||| |||||||||||| || | | ||| | || || Sbjct 40991 GATTGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTT 41050 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || ||||| ||||| | ||| | ||||| || | || ||| ||| || Sbjct 41051 AACCAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTG 41110 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 |||||||| || || || ||||| | |||||||| ||||||||||| || || || || Sbjct 41111 AAACTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 41170 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| || || || || || || || || || | ||| ||||| Sbjct 41171 GTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCA 41230 Query 26234 -GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292 | | ||| || | || || | | |||||||||||| ||| | || |||||| || Sbjct 41231 CGGATTAAACTAG-ATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAA 41289 Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 || |||||||||||||||||||||||||||||||| || || || |||||||||||||| Sbjct 41290 CACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAA 41349 Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412 ||| ||||| ||||| ||||||||||| ||||| | |||||| |||||| || || || Sbjct 41350 TACTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACC 41409 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGA-GCTGCGGATAGTGGTGCTGTATATG 26471 |||||| | || ||||||||||| ||||| ||| ||||| | || ||| |||| | | Sbjct 41410 TTGTCCAATTGGGTAAACTAAGAATACTGC-AGATGCTGCAGCTACTGGAGCTGAGAAAG 41468 Query 26472 CAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTC-TCCC-TGC 26529 | || || ||||| || | ||| |||| | ||| |||||||| | | |||| || Sbjct 41469 CTACGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATG- 41527 Query 26530 ATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTA 26589 || ||||| |||| ||||||||| || | | ||||| || || || || ||||| Sbjct 41528 -TAGCAAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTA 41586 Query 26590 TAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTT 26649 ||||||||||| | | |||||||||| | ||||| || || | || || ||||| Sbjct 41587 AAGCCACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTT 41646 Query 26650 AGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAAC 26709 ||| || | ||||| |||| || || ||||||||||| | | || || | || Sbjct 41647 AGAACTAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCAC 41706 Query 26710 TGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACA 26769 ||| ||||| || ||||| |||||||| || |||||||||||||| || | || || || Sbjct 41707 TGGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCA 41766 Query 26770 TGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACG 26829 | || |||| | ||| || ||||| | || |||||||| || | || | ||| Sbjct 41767 GCTTGTAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACG 41826 Query 26830 GTTCTCAGTACTTGTAACCCACTCACAAAACCTCTCCCA 26868 ||| || || || || | ||| || || | |||||| Sbjct 41827 GTTTTCTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 41865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147701736877920