Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq5733 688 0.0 >seq5733 Length=57551 Score = 688 bits (762), Expect = 0.0 Identities = 727/956 (76%), Gaps = 6/956 (1%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || ||||||||||||||||| | |||||||| | | | ||| Sbjct 41832 GAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCT 41773 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 | | |||||||| |||| ||||| || |||||||| ||||| || |||||||| ||| Sbjct 41772 ACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGT 41713 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || ||||| || | | || || |||||||| ||| | ||||| ||| | ||| Sbjct 41712 GAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCT 41653 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 ||||| ||||| |||||| | |||||||| || |||||||||| || || | || ||| Sbjct 41652 AGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAG 41593 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||| | ||||| |||||||||| |||||||||||| || |||||| | | || | | Sbjct 41592 TGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT 41533 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| || ||| | ||||||||| |||||| | || |||||||||||||| | Sbjct 41532 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 41473 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 || || | ||| || |||||| |||| || | || |||||| | ||||| || | || Sbjct 41472 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGA 41413 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 |||||| |||||||||| |||||| | ||||| ||||||||||| |||| ||||| Sbjct 41412 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTA 41353 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||||||||||||||| || ||||||||||| ||||| ||| ||| || || ||| Sbjct 41352 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 41293 Query 155533 GTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATC 155592 ||||| ||||||||| | ||| ||||||||||||||| | || |||||| ||||| Sbjct 41292 GTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATC 41233 Query 155593 CGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 155652 ||||||||| || | ||| ||||| |||||||| |||||||||||||||||| Sbjct 41232 CGTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 41173 Query 155653 ACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCC 155712 ||||| ||||| || ||||| || || ||||| || ||| | |||||||| || || Sbjct 41172 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 41113 Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 |||||||||||| | | | ||||||||| | ||||||||||| || || | |||||| Sbjct 41112 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGG 41053 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 ||||||| | ||||| || |||||||| ||| | |||||||||||||||||||| Sbjct 41052 TTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAA 40993 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 || || || || |||| ||| || ||| || ||||| |||||| | ||||| Sbjct 40992 TCAGTTGTTGA---TAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 40936 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGA 155945 |||| | | |||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 40935 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584792426615560