Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq5733 600 3e-167 >seq5733 Length=57551 Score = 600 bits (664), Expect = 3e-167 Identities = 744/1013 (73%), Gaps = 4/1013 (0%) Strand=Plus/Plus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| | || Sbjct 40874 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAA-TC 40932 Query 40593 TGT-CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 | | ||| | || ||||||||||| || || ||| | | || || ||||| Sbjct 40933 AGCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGA 40992 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| ||||| ||||| || | |||||| ||||||||| | ||| | | || | Sbjct 40993 TTGGTTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAA 41052 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || || | ||| || | ||| | | |||||||||| ||||| |||||||| Sbjct 41053 CCAGATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAA 41112 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 || ||||| || |||| | ||||||||||||||||||||||||||||| ||||| Sbjct 41113 ACTCGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGT 41172 Query 40832 CTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCG 40891 || |||| || || || || || |||||||| ||| | || || || || Sbjct 41173 TTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCACG 41232 Query 40892 AATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGAC 40951 || | || || ||||| |||||||||||| || |||| |||||||| || Sbjct 41233 GATTAAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACAC 41292 Query 40952 GCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGAC 41011 || ||||| || |||||||||||||||||| ||||||||||||||||||||||| || Sbjct 41293 ACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATAC 41352 Query 41012 AAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTG 41071 |||||||||||||| || ||| || ||||||||||||||||||||||| ||| || Sbjct 41353 TAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTG 41412 Query 41072 ACCGAATGGATAAACTAAGAATACAGCTAGA-GCTGCTGACAATGGAGCTGTGTATGCCA 41130 || | ||| |||||||||||||| || ||| ||||| | | |||||||| | | || | Sbjct 41413 TCCAATTGGGTAAACTAAGAATACTGC-AGATGCTGCAGCTACTGGAGCTGAGAAAGCTA 41471 Query 41131 CAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATG 41190 | || ||||| || | ||| |||| | ||| ||||||||| | | || ||| Sbjct 41472 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 41531 Query 41191 CTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCC 41250 ||||| |||| ||| ||||| || || | ||||| || || || |||||||| |||| Sbjct 41532 AAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 41591 Query 41251 ACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGC 41310 ||||||| | | | |||||||| | ||||||||| || | || || |||||||| | Sbjct 41592 ACTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 41651 Query 41311 TCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT 41370 | |||| || || || | ||||| ||||| ||||| | | || || | || || | Sbjct 41652 TAGGAATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 41711 Query 41371 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGG 41430 |||| || ||||| |||||||| || ||||||||||| || ||||| ||||| || | | Sbjct 41712 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 41771 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 |||| |||| ||||| ||| ||||||| ||||| |||||||| | ||||| ||||| | Sbjct 41772 TAGCTGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTT 41831 Query 41491 CGGTGCTAGTGACCCAGTTACAAAACTTCTCCCAGTTGGTAGTAGTGTCTCTT 41543 | |||||||||| ||| || || |||||| | ||||| | |||||| Sbjct 41832 CTGTGCTAGTGATCCAAGAGCAGAAGCGCTCCCATAAGCTAGTACTTTCTCTT 41884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143692415467434