Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq5733 691 0.0 >seq5733 Length=57551 Score = 691 bits (766), Expect = 0.0 Identities = 717/938 (76%), Gaps = 6/938 (1%) Strand=Plus/Plus Query 67368 TCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTG 67427 || |||||||||||||| |||||||| |||||||| |||||||| || | | || | | Sbjct 40880 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 40939 Query 67428 TTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGG 67484 || | ||||| |||||||| ||||| || |||| ||||| || |||||| Sbjct 40940 TTGATAATGTCAGCCCAAGTGTTGATCAC---ACGACCTTGACTATCAACAACTGATTGG 40996 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 ||||||||||||||||| | ||| ||||||||||| ||||| | ||||| |||||| Sbjct 40997 TTGAAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAG 41056 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGAT 67604 || | || || || ||||||| | ||||||||| | | | ||||||||||||| Sbjct 41057 ATACCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTC 41116 Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 || || |||||||| || || || ||||| || || ||||| || ||||||||||| ||| Sbjct 41117 GCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCT 41176 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 |||||||||||||| |||||||||||||| || | || |||||| | ||| Sbjct 41177 TCTTCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGTTTCACGGATT 41236 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | ||| || ||||||||||||||||||||||| || | || ||||| || ||||| Sbjct 41237 AAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCA 41296 Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 || || ||| ||||||||||||||||||||| |||||||| ||||||||||| || ||| Sbjct 41297 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 41356 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 ||| |||| ||||||||||||||||| | |||||| | |||||||| |||||| || Sbjct 41357 ATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCA 41416 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | || || || ||||| || || ||||||||| |||||||| ||| | ||||| | Sbjct 41417 ATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 41476 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTG 68024 |||||||||||||| || | |||||| ||||||||| | ||| || ||| | Sbjct 41477 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGCAAGCT 41536 Query 68025 ATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCA 68084 | || | | |||||| || |||||||||||| |||| ||||| || || | |||||| Sbjct 41537 ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACTCG 41596 Query 68085 TCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGA 68144 |||| || || |||||||| | || |||||||||| ||| || ||||| ||||||||| Sbjct 41597 TCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAGGA 41656 Query 68145 ACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTG 68204 | ||| ||||| | || |||||||| ||||| | || || || || || ||||| | | Sbjct 41657 ATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACGG 41716 Query 68205 ATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCT 68264 |||||||||||||| |||||||||||||| ||||| || ||||||||||| ||| ||| Sbjct 41717 ATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGCT 41776 Query 68265 GCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 | | || || ||||| || |||||||||||||| Sbjct 41777 GTTAATAATGTTGGGATCATTAAAACACCGAACCAACC 41814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566905734899160