Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq5733 749 0.0 seq225 565 3e-156 >seq5733 Length=57551 Score = 749 bits (830), Expect = 0.0 Identities = 758/981 (77%), Gaps = 8/981 (1%) Strand=Plus/Plus Query 67849 TCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGG 67908 || |||||||||||||| |||||||| || ||||| ||||||||||| ||| |||| ||| Sbjct 40880 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 40939 Query 67909 TTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTG 67968 |||| || ||| ||||| || | || ||| |||||||| | || |||||| Sbjct 40940 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGACTATCAACAACTGATTGGTTG 40999 Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATA 68028 ||||||||||| || | ||| |||||||| || ||||||||||| ||||| ||||||||| Sbjct 41000 AAGTTGAAACCGTTTAAGTTAAATGCCATAGTACTAACACCAAGAGCAGTTAACCAGATA 41059 Query 68029 CCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCA 68088 || || || ||||||||||| | ||||||||| | | ||| ||||||||||| || Sbjct 41060 CCTACAACTGGCCATGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTCGCG 41119 Query 68089 TACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCT 68148 || |||||||| | ||| || ||||| || |||||||| || ||||||||||| |||||| Sbjct 41120 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 41179 Query 68149 TCTTGACCGAACTTGTAACCATAGTT--CTGGGACTCAGT-TTCAGTGGTTTCACGAACC 68205 ||||| ||||| |||||||| ||||| | | || | || |||||| |||||| | Sbjct 41180 TCTTGTCCGAATTTGTAACCGTAGTTAGCAGATACGCCGTCTTCAGT---TTCACGGATT 41236 Query 68206 AGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCA 68265 | ||| || || || ||||| ||||| |||||||| | |||||||||||| || ||| Sbjct 41237 AAACTAGATGTTACAAGAGAACCGTGCATAGCACTGAATAAAGATCCACCAAACACACCA 41296 Query 68266 GCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGC 68325 ||||| || ||||||||| |||||||| || |||||||| ||||||||||| || | | Sbjct 41297 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 41356 Query 68326 ATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCG 68385 ||| ||||||||||||||||||| || | |||||| | |||||||| |||||| || Sbjct 41357 ATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCA 41416 Query 68386 AAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAG 68445 | || || || | ||| ||||| |||||||| || || || || ||| | || || | Sbjct 41417 ATTGGGTAAACTAAGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 41476 Query 68446 ATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAA-A 68504 |||||||||||||| || | ||| ||| |||||||||||||||||||||||| |||| Sbjct 41477 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCAAGC 41535 Query 68505 GATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564 | ||| | | |||||| || | ||| |||||| |||||||||| ||||| | |||||| Sbjct 41536 TACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCACTC 41595 Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGG 68624 || | | || |||||||||| || || ||||||| |||||| || || |||||||| Sbjct 41596 GTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTAGG 41655 Query 68625 AACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACG 68684 || ||| ||||| | || |||||||| || || | |||||| ||||| || |||||||| Sbjct 41656 AATAACTGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACG 41715 Query 68685 AATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGTTGC 68744 ||||||||||| || || || || || |||||||| |||| |||||| ||| | || || Sbjct 41716 GATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGC 41775 Query 68745 TGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGT 68804 || | | || |||||||| | || ||||||||||| | ||| | ||||| ||||| Sbjct 41776 TGTTAATAATGTTGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTGT 41835 Query 68805 GGAAGTCACCCATTCGCAGAA 68825 | ||| | ||| |||||| Sbjct 41836 GCTAGTGATCCAAGAGCAGAA 41856 >seq225 Length=49998 Score = 565 bits (626), Expect = 3e-156 Identities = 734/1009 (73%), Gaps = 4/1009 (0%) Strand=Plus/Minus Query 66585 TATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGT 66644 |||||||| || || ||||| || | ||| || |||||||||||||| |||||||| ||| Sbjct 38841 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 38782 Query 66645 TGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAG 66704 || || | |||| ||| | | || ||||||||| |||| || || || |||||| Sbjct 38781 TGGTCTTGTGCAGCCATCCACGATCTAATACCTTCATTTAATAAGATATTTTTAGTGTAG 38722 Query 66705 AACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 || || || || ||||| ||||| || || | | |||||| ||||| || || || || Sbjct 38721 AAAGTTTCAAATTCTGGATCTTCAGCCGCACGAAGCTCTTGAGATACGAAATCGTATGCT 38662 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 | | || | || | ||||| |||||| | ||||||||||| | ||| | |||||| Sbjct 38661 CTTAAATTTAATGCTAAACCAACAATACCAAAAGAACTTGTCCATAAACCTGTTACAGGA 38602 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| ||||| |||||||| | ||| | || || || || | |||||| || ||| Sbjct 38601 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTCGAGAAAGCTACACCAAAAATTTGA 38542 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 |||||||| | || || || ||||| || ||||||||||| ||| || | || Sbjct 38541 GACCAGAATCTATTCGCTGTTACCATCGAATAAGTTTCTTCTGATTGTGTTGGTGTAAAC 38482 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| |||||||| |||||||||||| | || ||||| |||||||| | ||| Sbjct 38481 GCACGGAATGTGTTTGCAGCATCACCATCTTCAAATAGTGTATTTTCTACTGTGGCTCCA 38422 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGG 67064 ||||| ||||| | |||||||| || | || |||||||||||||||||||| || || Sbjct 38421 TGAATTGCAGATAATAATGCACCTCCTAAAATCCCTGCTACACCCATCATATGGAATGGA 38362 Query 67065 TTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACC 67124 || | |||||||||||||| ||||||| ||| | | ||||| || || |||| ||| Sbjct 38361 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAAAAATCGGAAAATAGCTGCAACC 38302 Query 67125 CCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 || ||| ||||||||| |||||||| | ||| || ||||| || || | || ||| | Sbjct 38301 CCAAAACTTGGAGCGAAGAACCAACTTGCTTGTCCTAGAGGATAAATTAAGAATACAGAA 38242 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA 67244 ||||| || || ||||| |||||||| ||||| || ||||| ||||| ||||| | ||| Sbjct 38241 ACAAATACCGCAATAGGTCCAGAGAATGCAATTGCGTTGTATGGACGAATACCTACAAGA 38182 Query 67245 CGTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGC 67303 || || | || || || || || || ||| ||||||| | | || || ||||| || || Sbjct 38181 CGAGCGATCTCGAATTGACGTAAACA-GAATCCAATTAAACCAAATGCACCGTGTAGTGC 38123 Query 67304 CACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGG 67363 | |||| ||| | ||| |||| ||| | ||| || |||||| || || | ||||| Sbjct 38122 TATAAAAGCCCATAATCCACCAATTTGAAGCCAACGAGTGAAATCTCCTTGCGCTTCAGG 38063 Query 67364 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGT 67423 ||||| | || || | || ||||||||| | || || ||||| || || | || Sbjct 38062 TCCCCATAATAAAATTAATGAGTGACCCATACTGTTTGCTGGTGTTGATACTGCTACAGT 38003 Query 67424 GAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | || ||| || || | |||| ||| || | ||| ||||| ||||| ||| || Sbjct 38002 TAAGAAGTTACATCCTTCTAAATAAGAAGATGCTAATCCATGAGTATACCAAGATGTAAC 37943 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGT-GGGAAAAAGAAGTA 67542 ||| || ||||| || | ||| ||||||| ||| | | | || || ||||| || || | Sbjct 37942 AAAAGTCGTACCTGTTAACCATCCACCAACTGCAAGAAATGCGGTTGGGAATAATAAA-A 37884 Query 67543 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 | || |||||||| | ||| || || ||||||||||| | ||||||||| Sbjct 37883 GGCCTGACCAACCAATAAACACGAAACGATCTCGTTTTAACCAGTCATC 37835 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 35509 AACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGC 35568 ||||||||||| ||| ||||||| |||||||||| ||||||| |||| ||||| || | Sbjct 43092 AACTCCCCAGGCTGGACTTGAACCAGCGACCAATCGGTTAACAGCCGATTGCTCTACCAC 43151 Query 35569 TGAGCTACTGAGGATT 35584 |||||||||||||||| Sbjct 43152 TGAGCTACTGAGGATT 43167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572012561371320