Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq225 140 1e-27 seq4332 84.2 6e-11 >seq225 Length=49998 Score = 140 bits (154), Expect = 1e-27 Identities = 343/511 (67%), Gaps = 18/511 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||| | | ||| |||| |||||| ||||| | | |||||| ||| Sbjct 14806 CTATCAAAACGACCCGGTCTTAATAAAGCTGAGTCTAAAATATCTACGCGGTTTGTAGCT 14865 Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | ||||| || | ||| || | || |||||| ||||| ||||| | |||| Sbjct 14866 GCAATTACAATAACACCATTA--TTAGTTTCAAATCCGTCCATTTCGGTTAAGAGCTGAT 14923 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 | | |||||||| | ||| ||||| ||| | | | || || || |||| | Sbjct 14924 TTAACGTTTGTTCGCGTTCGTCATTCCCACCACC---AACTCCAGA---GCCTCTTTGTC 14977 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||| || |||||||| |||||||| || | ||| || | ||| | | || | | Sbjct 14978 TACCAACTGCGTCAATTTCATCAATGAAGATAATACAAGGTGTTTTTGCTTTAGC--TCG 15035 Query 289088 C--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | ||| | || | | | |||||||| | ||||||| | | ||||||||||| || Sbjct 15036 CTTAAAAAGATCACGAATTCTTGATGCTCCTATACCAACAAATAACTCTACAAATTCTGA 15095 Query 289146 AGCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||||| ||| || || | || ||||| || ||||| | ||| | || | | Sbjct 15096 TGCGGAGCAACT--AAAAAAGGGAACTTTTGCCTCACCTGCAATAGCCTTAGCTAATAAA 15153 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || ||||| ||||| || || || ||||| ||| || ||||| | ||| || ||| || Sbjct 15154 GTTTTACCCGTTCCTGGAGGGCCTGATAATAAAACACCTTTTGGGATTTTAGCACCAACA 15213 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 |||| || || |||||||||| |||||||| | || || | ||| | Sbjct 15214 CGAGTATAACGTTCGGGTTTCTTTAAAAAAGTAACAATTTCTTGAAACTCTTCTTTAACT 15273 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAA 289354 |||||| || || |||||| |||| |||| Sbjct 15274 TCATCAATACCAGCAACATCATCAAAGGTAA 15304 >seq4332 Length=45634 Score = 84.2 bits (92), Expect = 6e-11 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222 ||| ||||| || || ||||| | | ||| ||||| || || |||| ||| |||| Sbjct 28378 TGCCGCGTCTTTCCCCCCCATGATCCTGGTACCAAACTGCCCACTTGG---GAAGAGATA 28322 Query 60223 A---ATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACT 60279 | || || || || || || ||||||||||| | || ||||| | || ||||| Sbjct 28321 ACCAATATTATTCGACCCCACAAAATTTTGAGCCATTCCTACAATCGTCCCGTTTAAGGA 28262 Query 60280 GGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTT 60339 || || || || ||||| | |||||||| || ||||||||| || || |||||||| Sbjct 28261 CGCCTCCCCATGGTGATAGGCGGAATGTTCAGACACATATCCAGCGAGCTGCGCGACTTT 28202 Query 60340 AATTTC 60345 || || Sbjct 28201 GATCTC 28196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471707263813787