Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq5733 758 0.0 seq225 522 3e-143 >seq5733 Length=57551 Score = 758 bits (840), Expect = 0.0 Identities = 745/955 (78%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 157607 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 157666 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 157667 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 157726 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 157727 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 157786 || || ||||| ||||| | || || |||||||| ||| | ||||||||| | || | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 157787 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 157846 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 157847 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATG 157904 || || ||||||||||||| |||||| |||||||| |||||| | | ||| | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 157905 CATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 157964 | |||||||||||||| ||||||||| ||||||||||| ||||| || ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 157965 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 158024 |||| | || |||||||| |||||||||||||| |||||| | || || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 158025 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158084 ||||| ||||| |||| ||||||| | ||||| ||||||||||| |||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 158085 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158144 |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 158145 TATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC 158204 | || ||||||||| | ||| |||||||||||| ||| || || || | | | Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 158205 GTGAAACGACTGAA-ACAGAGTCACAG--AACTACGGTTACAAGTTCGGTCAAGAGGAAG 158261 ||||| |||||| || | || | | |||||||||||||| ||||| ||||| |||| Sbjct 41231 GTGAA---ACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 41175 Query 158262 AGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTT 158321 | || || |||||||| || ||||| || ||||| || ||||| |||||||||||||| Sbjct 41174 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 41115 Query 158322 CATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 158381 ||||||||||| ||| | || ||||||||| | ||||||||||| ||||| || |||| Sbjct 41114 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCT 41055 Query 158382 GGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACC 158441 |||| || || ||||| || || |||||||| ||| | ||||||||||||||||||| Sbjct 41054 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACC 40995 Query 158442 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCG 158501 | || | ||||| |||| ||||||||| | ||||| ||||| || | | ||||| | Sbjct 40994 AATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 40935 Query 158502 CTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 158556 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 40934 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 522 bits (578), Expect = 3e-143 Identities = 730/1017 (72%), Gaps = 10/1017 (1%) Strand=Plus/Plus Query 159304 TCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTC 159363 ||||||||||| | ||||||||||| || || ||| | || ||||| || || || || Sbjct 37833 TCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTA 37891 Query 159364 TTCCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGT 159422 ||||| || || | ||| || |||| || ||| | || || || |||||||||| | Sbjct 37892 TTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCT 37951 Query 159423 TGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCT 159482 ||||| || || || | || ||| ||| | || || |||||| | || | ||| Sbjct 37952 TGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCA 38011 Query 159483 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 159542 || || || || || || ||||||||| || | || || | ||||| ||||| | Sbjct 38012 GTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCG 38071 Query 159543 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCAC 159602 || || ||||| || ||| ||| |||| ||||||||| |||| | ||||| ||| Sbjct 38072 CAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACAC 38131 Query 159603 GGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGT 159662 ||||| || | ||||||| ||| | ||||| || || | || ||||| | ||| Sbjct 38132 GGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 38191 Query 159663 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159722 || ||||| ||||| || ||||| |||||||| |||||||| || ||||| || ||| Sbjct 38192 ATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTC 38251 Query 159723 CTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCA 159782 | || || || | || || | |||||||| |||||||| |||||||| ||||| Sbjct 38252 TTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 38311 Query 159783 ATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCAT 159842 || || |||| | || ||| | ||||| || || |||||||| | ||||| |||||| Sbjct 38312 ATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAT 38371 Query 159843 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACT 159902 |||||||| || || || || |||| || ||| || | ||| || ||||| | || Sbjct 38372 ATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACA 38431 Query 159903 GTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCA 159962 ||||| || ||||| | ||||||||| || ||||| || || |||||| || Sbjct 38432 GTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 38491 Query 159963 ACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 160022 || ||| || || ||||| || ||||| || || || | |||||||| || || || Sbjct 38492 ACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTT 38551 Query 160023 GGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATG 160082 ||| | || || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 38552 GGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACA 38611 Query 160083 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGAT 160142 ||| | |||||| ||| |||| ||| |||| | || | ||| | | || |||||| Sbjct 38612 GGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGAT 38671 Query 160143 TTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 160202 |||||| ||||||| | | || || ||||||||||||||||| || |||||||| ||| Sbjct 38672 TTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 38731 Query 160203 AACATCCTATTGAACGAAGG-ACTA---CGTGCATGGTTGGCACCTGCTGATCAACCCCA 160258 || ||| |||| || ||||| | || |||| |||| | |||| || ||||| || Sbjct 38732 AATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCAC---AAGACCAACCACA 38787 Query 160259 TGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAAG 160315 |||||| ||| | |||||||| || || || || | || |||||||||||||| || Sbjct 38788 TGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAG 38844 Score = 118 bits (130), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 158735 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 158794 ||||| || || |||||||| ||||||| || |||||| ||| |||| | ||| Sbjct 18860 TGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAACTACCTTAT 18919 Query 158795 TCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 158854 ||||| | | ||| |||| || | ||||| || | |||| ||| ||| ||||| Sbjct 18920 TCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTACTATTGAT 18979 Query 158855 CAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGT 158914 || ||| || || || ||||| |||||||| |||||| ||||| || | || || Sbjct 18980 CAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTATTAACTTGC 19039 Query 158915 GTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGA-GAAC 158965 ||||||||||| ||||||||||| || | || |||||||||| |||| Sbjct 19040 GTAGCATATCCTGCATCTGATTGTCAAATTTTAACAAATCAAGAGGATGAAC 19091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548334293267320