Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq5733 740 0.0 seq225 574 5e-159 seq4011 87.8 2e-12 >seq5733 Length=57551 Score = 740 bits (820), Expect = 0.0 Identities = 741/955 (78%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||| | || |||||||||||||||| | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | ||||||||| | || |||||||| || || || || || |||||||| ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || || ||||| || || | ||||| |||||||| ||| | ||||| ||| ||||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||||||||||| ||| | |||||||| || | |||||||| || ||| | || || ||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTAT--CTATG 151163 || |||||||||||||||| |||||| || || || |||||| | | ||| | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 151164 CTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCG 151223 || ||||||| ||||| |||||||| ||||| || || |||||||| ||||| | || Sbjct 41530 CT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 | || | ||| |||||||| ||||| || |||||| ||| | || || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTG 151343 ||||| |||||||||| ||||| | ||||||||||| || ||||||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 151344 TCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTG 151403 | ||||||||||| ||||||||||| |||||||| ||||||||| |||||| ||||||| Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 151404 TCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 151463 | || |||||||| | ||| || |||||||||||||| || || ||| | | | Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 151464 GTGAGACCACCGAAAAC-GAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAG 151520 |||| || ||| || | || | | ||||| |||||||| ||||| |||||||||| Sbjct 41231 GTGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 41175 Query 151521 AGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTT 151580 | || ||||||||||| || ||||||||||||||||| ||| | |||||||||||||| Sbjct 41174 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 41115 Query 151581 CCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCT 151640 |||||||| || ||| | | ||||||||| | || |||||||| ||||| ||||||| Sbjct 41114 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCT 41055 Query 151641 GGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACC 151700 |||| ||||| |||||||| || || |||||||| ||| | ||||||||||||||||||| Sbjct 41054 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACC 40995 Query 151701 AGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTG 151760 | || | | ||| |||| || || | ||||| ||||| ||| || | ||||||| Sbjct 40994 AATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 40935 Query 151761 CAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 151815 | | | | ||||||||||| |||||||| ||||| || |||||||||||||| || Sbjct 40934 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 574 bits (636), Expect = 5e-159 Identities = 738/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 152371 GATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 152430 ||||||||| | || |||| |||||||| ||| |||||||||| || ||| || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTT-TTATTATT 37893 Query 152431 CCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTG 152489 |||| | || | |||||| |||| || ||| | || || || ||||| | || ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 152490 GTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGT 152549 ||||||||| || || ||| ||| ||| | || || ||||| | |||| ||||| Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 152550 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 152609 || || |||||| | ||||||||| || | | | | ||||| ||||| || || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 152610 AGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGG 152669 ||| |||||| | ||| |||| | || ||| | ||||||||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 152670 GGCTTTCGCTCTAATCGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGTCTCATCGGTA 152728 || || | | |||| || ||| || || || || || || | || ||||| | |||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 152729 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 152788 | ||||| ||||| || ||||| |||||||| ||||| || || |||||| || || Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 152789 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAA 152848 | || || ||||| || ||| | |||||||| ||||||||| ||| ||||| ||||| | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 152849 TCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATA 152908 | |||||||| | | ||| | ||||| ||||| ||||||||| | ||||| || |||| Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 152909 TGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAG 152968 |||||||||| ||||| ||||| ||||| || || | ||||| |||||||| | |||| Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 152969 TAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGC- 153027 |||| ||||| | | | |||||||||| |||||||| ||| || || ||| | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTT-TACACCA 38491 Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087 || ||| |||||| || ||||||||||| || || || | |||||||| || || ||| Sbjct 38492 ACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTT 38551 Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 153147 || | ||||| || ||||| |||||||||||||| ||| | ||||| ||||| | Sbjct 38552 GGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACA 38611 Query 153148 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 153207 ||| | ||||| |||| |||| || ||||| | || | ||| | | || |||||| Sbjct 38612 GGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGAT 38671 Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 153267 || ||||||||||| | | ||| | |||||||| |||||||| || ||||| || || Sbjct 38672 TTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 38731 Query 153268 AATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAG 153327 |||||| | || || |||||| || | | ||| |||| | |||||||| ||||| Sbjct 38732 AATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAA 38791 Query 153328 AACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCTGTGATA 153377 || || || ||||| || ||||| || ||||| || ||||| || | ||| Sbjct 38792 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38841 >seq4011 Length=2654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 9780 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 9835 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 2403 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCG 2348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549582201991720