Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq5733 610 8e-170 seq225 502 3e-137 >seq5733 Length=57551 Score = 610 bits (676), Expect = 8e-170 Identities = 745/1009 (74%), Gaps = 18/1009 (2%) Strand=Plus/Minus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 ||| || || || | ||| | |||||||| ||||| |||||||||||| | |||| Sbjct 41836 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAAC 41777 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 ||| | || ||||| | || |||||||| || |||||||| |||||||| || || Sbjct 41776 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 41717 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 | | |||||||| || || || | ||||| || |||||||| ||| | ||||| || | Sbjct 41716 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTAT 41657 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 ||| ||| ||||| || || | |||||||| || | |||||||| || || | || Sbjct 41656 TCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 41597 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 72553 ||||||| | || ||||| ||||||||||| | || | || |||||| ||||| || Sbjct 41596 CGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC-TTATTAGGTG 41538 Query 72554 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 72613 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 41537 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 41478 Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673 | | ||||| | |||||| || ||| ||||||||| |||||||||| | || || ||| Sbjct 41477 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAA 41418 Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733 | || || ||| ||||||||||||||||| ||||||| || ||||| |||||||||| Sbjct 41417 TTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCA 41358 Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 41357 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 41298 Query 72794 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTC 72853 | ||| |||| ||||| | | |||||||| ||||||||||| ||||| || || | Sbjct 41297 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTT 41238 Query 72854 TAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 72913 ||||| | || || ||| || | |||||||| || || ||||||||||||| Sbjct 41237 TAATCCGTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAG 41178 Query 72914 AAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATG 72973 ||||||| || ||||| || ||||| || || ||||| || | ||||||||||| || | Sbjct 41177 AAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACG 41118 Query 72974 CATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTG 73033 | ||||||||||| ||| | |||||||||||| | |||| || || || || || Sbjct 41117 CGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTA 41058 Query 73034 TATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCA 73093 | |||||||| | | ||| | |||| |||||||| ||| | ||||| |||||||||| Sbjct 41057 TCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCA 40998 Query 73094 ACCAATCAGTTGTAGATGCAAACGGAAAGATTGT---ACCAACA--TGGGGAGATGTTCT 73148 ||||||||||||| ||| | ||| | || | ||||| |||| || || | Sbjct 40997 ACCAATCAGTTGTTGAT-----AGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTAT 40943 Query 73149 TAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACT 73208 ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| || Sbjct 40942 CAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCT 40883 Query 73209 AGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAACTGCACCT 73254 ||| |||| |||| || ||| | |||||||||||| || ||| Sbjct 40882 AGATTTAGCCGTATCTAATG-TTCTTC--CAGTTGCATTAAACGCTCCT 40837 >seq225 Length=49998 Score = 502 bits (556), Expect = 3e-137 Identities = 750/1056 (71%), Gaps = 35/1056 (3%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 |||||| | |||||| | | ||||| |||||||| ||||||||||||| || || | Sbjct 37812 AAAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTG 37871 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||| || |||||| | || || || | || ||| | || || ||||| || Sbjct 37872 GTTGGTCAGGCCTTTTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAG 37931 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || ||||| || || || ||||| || ||||| | ||||| || ||| | || ||| Sbjct 37932 GTACGACTTTTGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGAT 37991 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 || || ||||||| ||||||||||||||| | | ||||||||| || | | Sbjct 37992 GTAACTTCTTAACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTT 38051 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | | |||||||| || || ||||||||| | || ||| ||||| | |||||| ||| Sbjct 38052 TATTATGGGGACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTAT 38111 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTT 73711 || ||| ||||| |||| || | ||||| | || || ||| || ||| | || || Sbjct 38112 GGGCTTTTATAGCACTACACGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTC 38170 Query 73712 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATC 73771 ||||| || | ||||| || || ||||| ||||||||| | || || || | | ||| Sbjct 38171 GAGATCGCTCGTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATT 38230 Query 73772 GCAGTATTCACGAGCATCT---TTC-TAATATATCCTTTAGGAC-AGCATAGTTGGTTCT 73826 || ||||| | ||| ||| |||| |||||| |||||| |||| |||||||||| Sbjct 38231 GCGGTATT----TGTTTCTGTATTCTTAATTTATCCTCTAGGACAAGCA-AGTTGGTTCT 38285 Query 73827 TCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCC 73886 |||| || || || || ||||| || || || | | | |||||| |||| ||||||| Sbjct 38286 TCGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCC 38345 Query 73887 ACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCAT 73946 | || || ||||||||||| |||||||||||||||||||| || | || || |||| Sbjct 38346 ATAACTGGACACTTAATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCAT 38405 Query 73947 TACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAAT 74006 || ||| ||| || ||||| || |||||| | || ||| | | |||||| Sbjct 38406 TATTATCTGCAATTCATGGAGCCACAGTAGAAAATACACTATTTGAAGA----------- 38454 Query 74007 ACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAG 74066 || | | | | ||| | || ||| | || || || ||||| ||||| Sbjct 38455 ----TG--GTGATGCTGCAAAC----ACATTCCGTGCGTTTACACCAACACAATCAGAAG 38504 Query 74067 AGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTT 74126 | |||||| ||| | || || || ||||||||||| || || |||||| |||| || | Sbjct 38505 AAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGGTGTAGCTTTCT 38564 Query 74127 CAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACAT 74186 | |||||| | | | || ||| | ||||| || || ||||| | ||| | |||||| Sbjct 38565 CGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGGTTTATGGACAA 38624 Query 74187 CATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAG 74246 ||| | ||||| || ||| ||||| | || | ||||||||||| || |||||||||| Sbjct 38625 GTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTTCGTATCTCAAG 38684 Query 74247 AGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT- 74305 || | | || || ||||| ||||| |||||||| ||||||||||| || | |||| || Sbjct 38685 AGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATA-TCTTATTA 38743 Query 74306 AATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTC 74365 ||||||||||| ||| | |||||| | | || ||||| ||||| || ||||| ||| Sbjct 38744 AATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAATTTTGTATTC 38803 Query 74366 CCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 ||||| || || || ||||| || ||||| || ||| Sbjct 38804 CCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572831701457080