Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3524 226 3e-53 seq4035 109 7e-18 seq332 105 8e-17 seq5709 102 1e-15 seq5708 98.7 1e-14 seq2396 95.1 1e-13 >seq3524 Length=35516 Score = 226 bits (250), Expect = 3e-53 Identities = 380/542 (70%), Gaps = 16/542 (3%) Strand=Plus/Plus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 || |||||| || ||||||||||||||||| ||| | ||||||||| ||||||||||| Sbjct 10177 CTTGTCGACCGTGAACTGGATGGCGTCGGCCTTGGGGCGGGTGCGCAGGTAGTACATGCC 10236 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC 1627100 ||||||||| || ||| | || |||||| || |||| | ||||||| | Sbjct 10237 GGTCTTGAGTCCCTTCTTCCAGGAATAAAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGG 10296 Query 1627101 GTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 | ||| || | ||||| |||||| ||| | |||| | |||| |||||||| Sbjct 10297 ATTGGCCAGGTGAATATTGAGGGACTGGGATTGGCAAATGTAGGCCCCGCGGTCGGCCGC 10356 Query 1627161 CATGTCGATGGTGACCCGGTTGGGC---ACCTCCCACACGGTCTTGAAGATGGCCTTGAG 1627217 |||||||||| || | || || | ||||||||||||||| | | | ||||| Sbjct 10357 CATGTCGATG---ACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTCTTTGAG 10413 Query 1627218 GTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCT 1627277 || | || | | | || | | ||||||||||||| | | | || | Sbjct 10414 CTCACGGGGGA-----TGCTTGCTAC-GTTCTGCACCGAGCCGCGATTACCCATGATCTG 10467 Query 1627278 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGG-CGCTTGACCAGGTGGCGGT 1627336 || ||| | |||| |||| ||||||||| | |||||| ||| || ||||| || Sbjct 10468 GTTGCGGACCTCGGCATTCCAAAGGCCGCGCTCGATCAGGTCGC-CGAGCAGGTACTTGT 10526 Query 1627337 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCT 1627396 |||| | |||||| ||||||| ||||||||||||| || |||||| |||| | || Sbjct 10527 TGACGATGGTAAATTCGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCT 10586 Query 1627397 CGCAC-GCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACG 1627455 | ||| | |||| ||||||||||||| || | ||| | ||| ||||||||| |||||| Sbjct 10587 C-CACGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGC 10645 Query 1627456 AGGAGCGAGTTGCGCAGGCCGTGCTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAG 1627515 || || || ||||||| ||| |||| | ||| ||||||| || |||| |||||| Sbjct 10646 AGCAGGGAATTGCGCACGCCATGCTCCTGGACTTTGACGCGCAGGCCGGCCCAATCCCAG 10705 Query 1627516 CG 1627517 || Sbjct 10706 CG 10707 Score = 203 bits (224), Expect = 4e-46 Identities = 299/424 (71%), Gaps = 21/424 (5%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| ||||||||||| ||||| || ||||||||||||| ||||||||| Sbjct 11596 CTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATGCCGTTGGA 11655 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTG---CGCGGCAAA 1630181 ||||| | ||| | ||| | | | || || | || || || | || Sbjct 11656 GGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTATGGATCGAGACA-- 11713 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || || || || || ||||||||||| ||| || || ||||| ||||| ||||| || Sbjct 11714 -CCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAGAGTGTCATAGATACC 11772 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||||| |||||||| || || ||||| || ||| ||||| ||| ||| Sbjct 11773 GTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCGCGGCGT 11832 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||||||||||||||| || ||||| || ||||| | || | | |||||| | ||| Sbjct 11833 GCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGAGATTGTA 11892 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | | ||| |||||||||| | | || | || ||||| Sbjct 11893 GGT------------CTCAATCGCCGCGTCCACGTCCTC---CTTATGGATTCCAATGGC 11937 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 |||||||||| ||||| |||||| ||||| | ||||| |||| || |||| |||||| Sbjct 11938 TACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCATCTTGAGCAGGTA 11997 Query 1630482 GGAC 1630485 |||| Sbjct 11998 GGAC 12001 Score = 141 bits (156), Expect = 1e-27 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 1628388 CAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCG 1628447 |||||| || |||| || || || || ||||||||||| || || || |||| | Sbjct 11383 CAGGCCAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTG 11442 Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| || || ||| |||||| || ||||| || | |||||| ||||| | | ||| || Sbjct 11443 CATGAACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGCTCCAGCTCATT 11502 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| || || || | |||| || ||||||||||| ||||||||||| Sbjct 11503 GCCGTGGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTA 11562 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| || | ||||||||||||||| || || Sbjct 11563 GATGGCGAAAGAGCCCTTGCGCTTGCCCCCACC 11595 Score = 91.5 bits (100), Expect = 2e-12 Identities = 118/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 1627864 AACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGG 1627923 ||| | || || | |||||||||||||| ||| | |||| || |||| ||| ||| | Sbjct 10904 AACGCATCCGCCAAGCCCTGCACGCCGATGCCGACGGGCCTATGCCGCATGTTGGAGCGC 10963 Query 1627924 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACG 1627983 ||||| ||| ||||| |||||||||||| || ||||||||||||| | ||| Sbjct 10964 TTAGCCTCTTCCACGGGGTAAAAGTTGATGTCGATAACACGGTTGAGGTTGCGCGTCACC 11023 Query 1627984 ACCTGGACGATCTCGTGCAGGGCGCCGT-GGTCA-AAGA 1628020 |||| | |||||||| | ||||| || ||||| |||| Sbjct 11024 ACCTTGGTGATCTCGTAGA-GGCGCTGTAGGTCATAAGA 11061 Score = 87.8 bits (96), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628124 GGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAAAACTGGACGATCTCGGTGCACAG 1628183 || ||||||||| || || || ||||| || | ||| || |||||| |||||||| Sbjct 11119 GGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGATGATCTCCGTGCACAG 11178 Query 1628184 GTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTT 1628243 ||||| ||| | | ||||| ||||||||||| | | || ||| ||| ||||| Sbjct 11179 GTTGGAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTTGAGATTGCAGGCATCCTT 11238 Query 1628244 GTGGAGCATGTAGGGCGCGCCGGTCTCGATCTG 1628276 | |||||| ||||||| ||| ||||| | ||| Sbjct 11239 GAAGAGCATATAGGGCGTGCCCGTCTCCACCTG 11271 >seq4035 Length=10978 Score = 109 bits (120), Expect = 7e-18 Identities = 185/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| || || || || ||| ||| || || ||||||||||| | ||| || | Sbjct 7674 CTGATCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGGCACCAAGCCATT--A 7731 Query 1630125 CTCG--CCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAG 1630182 |||| || || || || | ||| || ||| ||||| | |||||| | | ||| Sbjct 7732 CTCGTTCCCTTCGTTCCTTTGATGTACGCTCCGTGCGCGCGAATGTTGTGCACAGACAAG 7791 Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 || || || || |||| ||| ||||| |||||||||||| | ||||| ||||| ||| Sbjct 7792 CCAATCCCACCCGCCGCCTTACTGATGACCGCGCACTGTTTCAAGGTGTCATAGATCCCC 7851 Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTG 1630302 | ||||| || |||||||| | ||| || || || || | || ||| ||| Sbjct 7852 ACAATCGAATCCGCCTTCATAGTTAAGAGGAAACATGAAGACATCTGGGGGAAACGCGTC 7911 Query 1630303 CCGGCGTTGAAGAGCGTGGGCGTCGC 1630328 ||||||| || | ||||||| ||| Sbjct 7912 CCGGCGTGAAATAAAGTGGGCGACGC 7937 >seq332 Length=2924 Score = 105 bits (116), Expect = 8e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | | ||||| || || ||||| | |||||| | || Sbjct 1999 GCTTGGCCAGCTCACCGGGGAGGGTGAGGCGGACTGCCGTCTGCACCTCGCGGGAAGAGA 1940 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 || |||| | || | ||||| ||||||||| ||| ||| |||||||| | Sbjct 1939 GGGTAGACTTCTTGGTGTAGCGGGCCAGCTTGCCGGCCTCTGTGGCGAGGCGGTCGAAGA 1880 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCGGGG 1254521 |||| || || ||||||| || |||| || | | |||||||| || ||||||| Sbjct 1879 TGTCACCGATGAAGGAGTTCAAGATGGACA-CGCCACGCTTGGAGATACCAGTGTCGGGG 1821 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||| |||||||||||| Sbjct 1820 TGCACCTGCTTGAGGACCTTGTAGATG 1794 >seq5709 Length=14106 Score = 102 bits (112), Expect = 1e-15 Identities = 152/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | | ||||| || || ||||| | |||||| | || Sbjct 12324 GCTTGGCCAGCTCACCGGGGAGGGTGAGGCGGACAGCTGTCTGCACCTCGCGGGAA--GA 12267 Query 1254403 TCGTGTTGCGCTTGTTCGAGT---GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || | ||| |||| || | ||||| ||||||||| ||| ||| |||||||| Sbjct 12266 CAGGGTAGA-CTTCTTCGTGTAGCGGGCCAGCTTGCCGGCCTCAGTGGCGAGGCGGTCGA 12208 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGTCG 1254518 |||||| | || || || | || ||||| || | | |||||||| || |||| Sbjct 12207 AGATGTCGCCAATGAAGGAATTTAAGATCGACA-CGCCACGCTTGGAGATACCAGTGTCG 12149 Query 1254519 GGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||| |||||||||||| Sbjct 12148 GGGTGCACCTGCTTGAGGACCTTGTAGATG 12119 >seq5708 Length=89791 Score = 98.7 bits (108), Expect = 1e-14 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | |||||||||||||||||| | ||||| || || |||| || || Sbjct 62782 CTATTCGAGCTCATCCTCGCCGCCAACTACATGGACATAAAACCCTTGCTAGACCTGACC 62723 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||| | ||||||| |||||||||||| ||| |||||||||||||||| ||||| Sbjct 62722 TGCGCCACAGTGGCCAGCATGATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTC 62663 Query 1592288 AACATCA 1592294 ||||||| Sbjct 62662 AACATCA 62656 >seq2396 Length=60920 Score = 95.1 bits (104), Expect = 1e-13 Identities = 127/173 (73%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATG---CACAAGGTGGTGCCCATG 507694 ||||||||||| || |||||| | ||||| ||||| ||| || | |||| Sbjct 24021 AACCGGCAGCCCTCTTTGCACAAGCTCTCCA---TCATGGCCCACCGCGTCAAGGTCATG 23965 Query 507695 CCCGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCA-CCTACAACGCCGACTTTGA 507753 ||| |||||||| | || |||||| | |||| | ||| ||||||| ||||| || || Sbjct 23964 CCCTGGCGCACCTTCCGCTTCAACGAGTGCGTC-TGCGCACCCTACAATGCCGATTTCGA 23906 Query 507754 CGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGG 507806 |||||| |||||||| ||||| |||||||| | || ||| || ||||||| Sbjct 23905 CGGCGATGAGATGAATATGCACCTGCCCCAGACTGAAGAGGCCCGTGCCGAGG 23853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106659039539767