Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2518 145 7e-30 seq35 127 2e-24 seq159 125 6e-24 seq4035 102 7e-17 seq4787 96.9 3e-15 >seq2518 Length=13831 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || ||||| || || || ||||| || || ||| Sbjct 5101 GATGCAAATCTTCGTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCCAG 5160 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||||||||| ||||| || || || ||||| ||||| Sbjct 5161 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 5220 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || ||||| || |||||||| | | | ||||||| ||||| Sbjct 5221 GCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGTACGCTGTCAGACTATAA 5280 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || ||||| || || || || ||||||||||| |||| || |||| Sbjct 5281 CATCCAGAAGGAGTCTACCCTGCATTTGGTGTTGCGTCTGCGTGGTGGCG 5330 >seq35 Length=30318 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || ||||| ||| | Sbjct 11277 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11218 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 11217 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11158 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 11157 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11098 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 11097 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11050 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || ||||| ||| | Sbjct 11505 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11446 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 11445 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11386 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 11385 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11326 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 11325 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11278 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || ||||| ||| | Sbjct 11733 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11674 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 11673 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11614 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 11613 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11554 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 11553 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11506 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || ||||| ||| | Sbjct 11961 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11902 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 11901 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11842 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 11841 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11782 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 11781 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11734 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || ||||| ||| | Sbjct 12189 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12130 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 12129 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12070 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 12069 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12010 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 12009 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11962 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || ||||| ||| | Sbjct 12417 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12358 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 12357 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12298 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 12297 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12238 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 12237 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 12190 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || ||||| ||| | Sbjct 11049 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 10990 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 10989 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 10930 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 10929 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 10870 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||||||||| |||| |||||||||| Sbjct 10869 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 10823 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || || ||||| || || || ||| | Sbjct 12645 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCCAGC 12586 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 12585 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12526 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || ||||| |||||||||||| | | | || || || ||| Sbjct 12525 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12466 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||||||| Sbjct 12465 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 12418 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || || || || ||||| || || || ||| |||||| | || | || || || ||| Sbjct 12846 GGCAAGACCATCACGCTGGACGTGGAGCCCAGCGACACGATCGAGAACGTGAAGCAGAAG 12787 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||| ||||| || || || || ||||| || || || | ||||| || ||||| ||| Sbjct 12786 ATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGGAAGCAG 12727 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 ||||||||| | | | || || || ||||| || ||||| || || || |||||| Sbjct 12726 CTGGAGGATGGCCGCACGCTTTCTGACTACAACATCCAGAAGGAGTCTACGCTCCACTTG 12667 Query 24911 GTGTTGCGATTGCGCGGAGGC 24931 ||| |||| ||||||||||| Sbjct 12666 GTGCTGCGCCTGCGCGGAGGC 12646 >seq159 Length=12779 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 10701 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 10642 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||||||||| ||||| ||||| || || || ||||| Sbjct 10641 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 10582 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||||||||| | | | || || || ||| Sbjct 10581 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAAC 10522 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 ||||| ||||| || ||| | ||| |||| |||| |||| || || |||| Sbjct 10521 ATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGAGGAA 10470 >seq4035 Length=10978 Score = 102 bits (112), Expect = 7e-17 Identities = 136/182 (75%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 139063 ACAAATTTGTTGACACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGG-TCG 139119 ||||||||| | || || |||||||| | ||| ||||| ||||| || |||||| ||| Sbjct 7174 ACAAATTTG--GGCAGAACGATCGAGGCCAAGTTACACACAGCCACCTCCTCGGGGCTCG 7231 Query 139120 CTGTATTCGACAATTTCGGCACACAAATTACTACACTTGA-TCGTACCTAAATTTTGTTG 139178 | || | || ||| || | ||||| || | | | || |||| ||||||||||| || Sbjct 7232 -TATACTGGATAATCTCCGTGCACAAGTT-CGAGCTTCGAATCGTCCCTAAATTTTGCTG 7289 Query 139179 ATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 |||||| || | ||||| || |||||| | |||||||| || ||||| ||||| | || Sbjct 7290 ATTGCTCTTAAGATTACACGCGTCTTTGAAGAGCATATAAGGCGTGCCCGTTTCGATCTG 7349 Query 139239 TG 139240 || Sbjct 7350 TG 7351 >seq4787 Length=11161 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || ||||| ||||| || || ||| | Sbjct 6468 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATTACCCTCGATGTCGAGCCCAGC 6527 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || ||||| || || || || || || || Sbjct 6528 GACACAATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 6587 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || | ||||||||||| || ||| |||||||| Sbjct 6588 CAGCGACTTATCTTTGCCGGCAAGCAGTTGGAGGAT 6623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449864695614280