Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq159 96.9 3e-15
seq35 95.1 1e-14
>seq159
Length=12779
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | || ||||| ||||| ||| | || ||||| |
Sbjct 10701 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 10642
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || || ||||| ||||| ||||| | ||| |||||
Sbjct 10641 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 10582
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | |||||| || ||||||||||| | | | || | |||| ||||||
Sbjct 10581 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAAC 10522
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAA 110508
||||| || || || || |||||| |||| | | |||||||| ||| ||| ||
Sbjct 10521 ATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGAGGAAAGAA 10466
>seq35
Length=30318
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || |||||| |
Sbjct 12645 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCCAGC 12586
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 12585 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12526
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 12525 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12466
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 12465 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 12419
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || ||||| |
Sbjct 11049 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 10990
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 10989 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 10930
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 10929 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 10870
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 10869 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 10823
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || ||||| |
Sbjct 11277 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11218
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 11217 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11158
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 11157 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11098
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 11097 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11051
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || ||||| |
Sbjct 11505 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11446
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 11445 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11386
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 11385 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11326
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 11325 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11279
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || ||||| |
Sbjct 11733 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11674
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 11673 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11614
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 11613 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11554
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 11553 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11507
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || ||||| |
Sbjct 11961 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11902
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 11901 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11842
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 11841 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11782
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 11781 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11735
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || ||||| |
Sbjct 12189 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12130
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 12129 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12070
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 12069 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12010
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 12009 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11963
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || || ||||| ||||| || | || ||||| |
Sbjct 12417 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12358
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || |||||||| ||||| || ||| | ||| || ||
Sbjct 12357 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12298
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | ||||| || ||||||||||||| | | || | | || ||||||
Sbjct 12297 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12238
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || |||||| | ||| ||||| | | ||||| || ||
Sbjct 12237 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 12191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412812160652543
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