Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3524 219 7e-51 seq5709 161 2e-33 seq332 161 2e-33 seq2878 113 7e-19 seq4035 105 1e-16 seq5708 89.7 8e-12 >seq3524 Length=35516 Score = 219 bits (242), Expect = 7e-51 Identities = 384/545 (70%), Gaps = 28/545 (5%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 |||||| || ||||||||||||| ||| || ||||||||||| |||||||||||||| Sbjct 10180 GTCGACCGTGAACTGGATGGCGTCGGCCTTGGGGCGGGTGCGCAGGTAGTACATGCCGGT 10239 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA--TGGACTCGGCATTCGGG 2069370 |||||| || ||| | || |||||| || |||| ||| | ||| | ||| Sbjct 10240 CTTGAGTCCCTTCTTCCAGGAATAAAAGTGCATGGAGGTGAGCTGGGCG-GGCGT--GGG 10296 Query 2069371 ACGGCACAGTAGAGG-TTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 | | ||| || ||||| |||||| ||| | |||| | ||||||||||||| Sbjct 10297 ATTGGCCAGGTGAATATTGAGGGACTGGGATTGGCAAATGTAGGCCCCGCGGTCGGCCGC 10356 Query 2069430 CATGTCGATGGTCACGCGGTTGGAC---ACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 |||||||||| |||| || | | ||||||||||||||| | || | ||||| Sbjct 10357 CATGTCGATG---ACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGCTCTTTGAG 10413 Query 2069487 ATG-CGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCT--GCGATGAG 2069543 | ||| || || | | | | |||||||||||| ||| | | |||| Sbjct 10414 CTCACGGGGGATGCTTG-------CTACGTTCTGCACCGAGCC--GCGATTACCCATGAT 10464 Query 2069544 GCGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATG-CGCTCGACCAGGTGGC 2069602 ||| ||| | |||| |||| ||||||||| | |||| | ||| ||| ||||| Sbjct 10465 CTGGTTGCGGACCTCGGCATTCCAAAGGCCGCGCTCGATCAGGTCGC-CGAGCAGGTACT 10523 Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 |||||| | |||||| ||||||| ||||||||||||| || |||||| ||||| | Sbjct 10524 TGTTGACGATGGTAAATTCGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGG 10583 Query 2069663 CCTCGCAC-GCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 2069721 ||| ||| | |||| ||||||||||||| || | ||| | ||| ||||||||| ||||| Sbjct 10584 GCTC-CACGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCC 10642 Query 2069722 ACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCC 2069781 | ||||| || ||||||| ||| | || | || | |||||| || |||| ||| Sbjct 10643 AGCAGCAGGGAATTGCGCACGCCATGCTCCTGGACTTTGACGCGCAGGCCGGCCCAATCC 10702 Query 2069782 CAGCG 2069786 ||||| Sbjct 10703 CAGCG 10707 Score = 150 bits (166), Expect = 3e-30 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCG 2071859 |||||| || |||| ||||| || || |||||||||||| | || ||||||| | Sbjct 11383 CAGGCCAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTG 11442 Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| ||||| || |||||| ||| |||| || | ||||| ||||| | | ||| || Sbjct 11443 CATGAACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGCTCCAGCTCATT 11502 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 |||||||||||| ||| || || | |||| || ||||||||||| ||||||||||| Sbjct 11503 GCCGTGGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTA 11562 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||| || | ||||||||||||||| || || Sbjct 11563 GATGGCGAAAGAGCCCTTGCGCTTGCCCCCACC 11595 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 ||||| || |||| |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 10904 AACGCATCCGCCAAGCCCTGCACGCCGATGCCGACGGGCCTATGCCGCATGTTGGAGCGC 10963 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 ||||| ||| ||||| |||||||||||| || |||||||||||| Sbjct 10964 TTAGCCTCTTCCACGGGGTAAAAGTTGATGTCGATAACACGGTTGAGGTTG 11014 >seq5709 Length=14106 Score = 161 bits (178), Expect = 2e-33 Identities = 186/245 (76%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| | | Sbjct 12363 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCACCGGGGA 12304 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT-- 1485587 | | ||||| || || ||||| | ||||||| | || | || | ||| || || Sbjct 12303 GGGTGAGGCGGACAGCTGTCTGCACCTCGCGG--GAAGACAGGGTAG-ACTTCTTCGTGT 12247 Query 1485588 -GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| ||||| ||||||||| ||| ||| |||||||| |||||| | || || | Sbjct 12246 AGCGGGCCAGCTTGCCGGCCTCAGTGGCGAGGCGGTCGAAGATGTCGCCAATGAAGGAAT 12187 Query 1485647 TCATGATCGACATCGATTTG-TTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 | | |||||||| || | |||||||| || ||||||||||||||||||||| ||| Sbjct 12186 TTAAGATCGACA-CGCCACGCTTGGAGATACCAGTGTCGGGGTGCACCTGCTTGAGGACC 12128 Query 1485706 TTGTA 1485710 ||||| Sbjct 12127 TTGTA 12123 >seq332 Length=2924 Score = 161 bits (178), Expect = 2e-33 Identities = 186/245 (76%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| ||||| |||||| ||||||| || ||| | | Sbjct 2038 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCACCGGGGA 1979 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT-- 1485587 | | ||||| || || ||||| | ||||||| | || | || | ||| || || Sbjct 1978 GGGTGAGGCGGACTGCCGTCTGCACCTCGCGG--GAAGAGAGGGTAG-ACTTCTTGGTGT 1922 Query 1485588 -GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| ||||| ||||||||| ||| ||| |||||||| ||||| || || |||| Sbjct 1921 AGCGGGCCAGCTTGCCGGCCTCTGTGGCGAGGCGGTCGAAGATGTCACCGATGAAGGAGT 1862 Query 1485647 TCATGATCGACATCGATTTG-TTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 ||| ||| |||| || | |||||||| || ||||||||||||||||||||| ||| Sbjct 1861 TCAAGATGGACA-CGCCACGCTTGGAGATACCAGTGTCGGGGTGCACCTGCTTGAGGACC 1803 Query 1485706 TTGTA 1485710 ||||| Sbjct 1802 TTGTA 1798 >seq2878 Length=6153 Score = 113 bits (124), Expect = 7e-19 Identities = 200/289 (69%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 794383 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATG 794442 ||||| | || | |||||| ||||| || || | ||||| || |||||| || Sbjct 6125 GGCATCAAACCCCTCTTCTTCAGCCAGAATATCGAGCAGAACGACCCACTGAAAAATATA 6066 Query 794443 CCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT--GT 794500 || || || || ||||| | | || |||||||| |||| |||| ||| || Sbjct 6065 CCTTCCACAGCCGCAAACGCAATCAGGCGCTCGGCGAAAG-----AGGCGTACTTCCGGT 6011 Query 794501 TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGC 794560 | |||| | | ||||||| ||||| | || | ||||| || || ||||| Sbjct 6010 CGCACCACCTGAGGGCCCACTGCGCCTTCCGACGGACACAAGGCACAGTATCAATGGCAT 5951 Query 794561 GAAAGAGGTGGTCCTTCTC--GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 794618 | ||| | || |||||| ||||| | ||||| ||| |||||||||||||| ||||| Sbjct 5950 TGAGGAGCTTGTGCTTCTCTTGACCG--TTCTTGATGTACGTGTCGATGAGGAGGGAGTA 5893 Query 794619 GGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||| ||||||||| |||||||| ||||||||||| || |||||| Sbjct 5892 TACCTCGCTGTGGATGTTCTCGATGGCTATCTGGAAGCCGTAGAAGCAG 5844 Score = 104 bits (114), Expect = 4e-16 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||||||||| || ||||| || ||| |||||||| ||||||||||||||| || Sbjct 5662 GGCCAGGTTTTCGTTAACGATCCCATCGGACGCGGCGAAGAAGGCGAGGACGTGCGAGAC 5603 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGAC 796304 || |||||||| | |||| ||| |||||| | ||||| | | ||||| | Sbjct 5602 GAAATGACGCTCCTTGTCGGAAAGCTTCTCCCAGTCAGTCTTGTCGTGGGCCAGGTCCAG 5543 Query 796305 CTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT 796359 |||||| || ||||| || |||||||| || | |||||||| ||||| ||| || Sbjct 5542 CTCCTCCGCCGTCCAGAAAGAGGCCTCAGCTTGCTTGTACATGTCCCAGATCTGT 5488 >seq4035 Length=10978 Score = 105 bits (116), Expect = 1e-16 Identities = 184/266 (69%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| |||||||| || || || ||| ||| || || ||||||||||| | ||| || | Sbjct 7674 CTGATCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGGCACCAAGCCATT--A 7731 Query 2073600 CTCG--CCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAG 2073657 |||| || || || || | ||| || || ||||| | |||||| | | ||| Sbjct 7732 CTCGTTCCCTTCGTTCCTTTGATGTACGCTCCGTGCGCGCGAATGTTGTGCACAGACAAG 7791 Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 || || || || |||||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 7792 CCAATCCCACCCGCCGCCTTACTGATGACCGCGCACTGTTTCAAGGTGTCATAGATCCCC 7851 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 | ||||| || |||||||| || || || || || || | || ||| ||| Sbjct 7852 ACAATCGAATCCGCCTTCATAGTTAAGAGGAAACATGAAGACATCTGGGGGAAACGCGTC 7911 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||| | || | ||||||| ||| Sbjct 7912 CCGGCGTGAAATAAAGTGGGCGACGC 7937 >seq5708 Length=89791 Score = 89.7 bits (98), Expect = 8e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | |||||||||||||||||| | ||||| || ||| | || || || Sbjct 62782 CTATTCGAGCTCATCCTCGCCGCCAACTACATGGACATAAAACCCTTGCTAGACCTGACC 62723 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||| || ||||||| | | |||||||| ||| |||||||||| ||||| ||||| Sbjct 62722 TGCGCCACAGTGGCCAGCATGATCAAGGGAAAGACGCCCGAGGAGATCCGTCGCACCTTC 62663 Query 2035749 AACATCA 2035755 ||||||| Sbjct 62662 AACATCA 62656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915624002443589