Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq159 149 4e-31
seq2518 131 1e-25
seq35 127 1e-24
seq4787 114 8e-21
>seq159
Length=12779
Score = 149 bits (164), Expect = 4e-31
Identities = 177/236 (75%), Gaps = 7/236 (3%)
Strand=Plus/Plus
Query 34748 TTTCCTCC-CCTC--AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAG 34804
|||||||| |||| | | ||| |||||||| | ||| ||||||||||||||| |||
Sbjct 10469 TTTCCTCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAG 10528
Query 34805 TCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864
||||| || |||| | || ||||| ||||| || || ||||| || || ||||| ||
Sbjct 10529 TCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCA 10588
Query 34865 TGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGG 34922
| || | ||| |||||||| | || ||||| || || || || || | || |||
Sbjct 10589 GGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTTCAC--ATTCTCGATTGTGTCGCTGG 10646
Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||| ||||| | ||| |||||||| ||||| |||||||| || ||||||||||||
Sbjct 10647 GCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 10702
>seq2518
Length=13831
Score = 131 bits (144), Expect = 1e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||||||||| || || | ||| | || ||||||||||| || |||||
Sbjct 5293 CTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAA 5234
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || || ||||| || | || | ||||||||||| | || ||||| || |||
Sbjct 5233 GATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 5174
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || ||| ||| ||||| | ||| || ||||| ||||| |||||||| ||
Sbjct 5173 CTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGAC 5114
Query 34966 AAAGATCTGCAT 34977
||||| |||||
Sbjct 5113 GAAGATTTGCAT 5102
>seq35
Length=30318
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 10823 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 10882
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 10883 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 10942
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 10943 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11002
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 11003 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11050
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 11051 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11110
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 11111 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11170
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 11171 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11230
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 11231 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11278
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 11279 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11338
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 11339 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11398
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 11399 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11458
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 11459 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11506
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 11507 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11566
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 11567 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11626
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 11627 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11686
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 11687 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11734
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 11735 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11794
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 11795 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11854
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 11855 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11914
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 11915 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11962
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 11963 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12022
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 12023 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12082
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 12083 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12142
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 12143 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12190
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 12191 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12250
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 12251 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12310
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 12311 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12370
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 12371 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12418
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 12419 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12478
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 12479 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12538
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 12539 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12598
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || |||||||| ||||| | |||||| || ||||| ||||||
Sbjct 12599 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12646
Score = 102 bits (112), Expect = 5e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| ||
Sbjct 12647 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12706
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || |||||||| || || |||||||| | ||
Sbjct 12707 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12766
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || || || ||| | |||| || ||| ||| ||
Sbjct 12767 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12826
Query 34931 TCAACGGTTATGGTCTTTCCC 34951
|| | || |||||||| |||
Sbjct 12827 TCCAGCGTGATGGTCTTGCCC 12847
>seq4787
Length=11161
Score = 114 bits (126), Expect = 8e-21
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880
|||| |||| ||||| ||||| ||||| ||||| |||||||| | || | |||||||
Sbjct 6624 CATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCCT 6565
Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940
|||| | || ||||| || ||| | || | || ||| ||||||||| | ||| |
Sbjct 6564 TGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTAA 6505
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||||| ||||| |||||||| || ||||| ||||||
Sbjct 6504 TGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATG 6467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325669575151769
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