Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq159 149 4e-31 seq2518 131 1e-25 seq35 127 1e-24 seq4787 114 8e-21 >seq159 Length=12779 Score = 149 bits (164), Expect = 4e-31 Identities = 177/236 (75%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 34748 TTTCCTCC-CCTC--AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAG 34804 |||||||| |||| | | ||| |||||||| | ||| ||||||||||||||| ||| Sbjct 10469 TTTCCTCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAG 10528 Query 34805 TCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864 ||||| || |||| | || ||||| ||||| || || ||||| || || ||||| || Sbjct 10529 TCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCA 10588 Query 34865 TGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGG 34922 | || | ||| |||||||| | || ||||| || || || || || | || ||| Sbjct 10589 GGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTTCAC--ATTCTCGATTGTGTCGCTGG 10646 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||| |||||||| ||||| |||||||| || |||||||||||| Sbjct 10647 GCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 10702 >seq2518 Length=13831 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||||||||| || || | ||| | || ||||||||||| || ||||| Sbjct 5293 CTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAA 5234 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| || | || | ||||||||||| | || ||||| || ||| Sbjct 5233 GATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 5174 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || ||| ||| ||||| | ||| || ||||| ||||| |||||||| || Sbjct 5173 CTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGAC 5114 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 5113 GAAGATTTGCAT 5102 >seq35 Length=30318 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 10823 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 10882 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 10883 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 10942 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 10943 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11002 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 11003 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11050 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 11051 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11110 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 11111 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11170 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 11171 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11230 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 11231 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11278 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 11279 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11338 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 11339 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11398 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 11399 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11458 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 11459 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11506 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 11507 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11566 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 11567 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11626 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 11627 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11686 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 11687 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11734 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 11735 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11794 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 11795 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11854 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 11855 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11914 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 11915 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 11962 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 11963 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12022 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 12023 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12082 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 12083 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12142 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 12143 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12190 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 12191 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12250 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 12251 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12310 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 12311 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12370 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 12371 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12418 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 12419 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12478 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 12479 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12538 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 12539 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12598 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| ||||| | |||||| || ||||| |||||| Sbjct 12599 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATG 12646 Score = 102 bits (112), Expect = 5e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| ||| | || ||||||||| ||||| ||||| || Sbjct 12647 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12706 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || |||||||| || || |||||||| | || Sbjct 12707 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12766 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || ||| ||| || Sbjct 12767 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12826 Query 34931 TCAACGGTTATGGTCTTTCCC 34951 || | || |||||||| ||| Sbjct 12827 TCCAGCGTGATGGTCTTGCCC 12847 >seq4787 Length=11161 Score = 114 bits (126), Expect = 8e-21 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| |||| ||||| ||||| ||||| ||||| |||||||| | || | ||||||| Sbjct 6624 CATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCCT 6565 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || ||||| || ||| | || | || ||| ||||||||| | ||| | Sbjct 6564 TGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTAA 6505 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| ||||| |||||||| || ||||| |||||| Sbjct 6504 TGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATG 6467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669575151769