Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq159 118 8e-22 seq2518 100 2e-16 seq35 98.7 8e-16 >seq159 Length=12779 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| ||| | || ||| | || Sbjct 10701 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 10642 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || ||||| | ||| |||||| Sbjct 10641 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 10582 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||| || ||||||||||||| | || | ||||||||||| Sbjct 10581 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAAC 10522 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| |||||||| || |||||| |||| || | ||||||| ||| Sbjct 10521 ATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGA 10474 >seq2518 Length=13831 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||| || ||||| || | || || || || || ||| |||| |||| | Sbjct 5099 AAGATGCAAATCTTCGTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCC 5158 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | || || |||||||| || || || ||| | || |||| Sbjct 5159 AGCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCGGAT 5218 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||||| || || |||||||||| || || | ||||| Sbjct 5219 CAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGTACGCTGTCAGACTAT 5278 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || ||||||||||| |||| |||||||| | |||| || || Sbjct 5279 AACATCCAGAAGGAGTCTACCCTGCATTTGGTGTTGCGTCTGCGTGGTGG 5328 >seq35 Length=30318 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || |||| | || Sbjct 12645 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCCAGC 12586 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 12585 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12526 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 12525 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12466 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 12465 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 12419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || ||| | || Sbjct 11049 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 10990 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 10989 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 10930 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 10929 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 10870 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 10869 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 10823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || ||| | || Sbjct 11277 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11218 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 11217 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11158 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 11157 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11098 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 11097 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || ||| | || Sbjct 11505 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11446 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 11445 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11386 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 11385 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11326 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 11325 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || ||| | || Sbjct 11733 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11674 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 11673 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11614 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 11613 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11554 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 11553 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || ||| | || Sbjct 11961 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11902 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 11901 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 11842 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 11841 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 11782 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 11781 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11735 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || ||| | || Sbjct 12189 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12130 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 12129 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12070 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 12069 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12010 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 12009 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 11963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || || || ||||| ||||| || | || ||| | || Sbjct 12417 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12358 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| || ||| Sbjct 12357 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 12298 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||||| || ||||||||||| | | || | | ||||||||| Sbjct 12297 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAAC 12238 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| | ||| ||||| || | |||| || || Sbjct 12237 ATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 12191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398848356469339