Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq5733 737 0.0 seq225 553 2e-152 >seq5733 Length=57551 Score = 737 bits (816), Expect = 0.0 Identities = 756/982 (77%), Gaps = 8/982 (1%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| ||| | ||| ||| | |||||||| || | |||||||||||||| | Sbjct 41856 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 41797 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| |||||||| | |||| || | ||||||||| | || ||| | ||||||||| Sbjct 41796 ATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 41737 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || |||||||| ||||| || |||||||| ||||| || || | || || |||||| Sbjct 41736 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 41677 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || ||| | ||||||||| ||||| ||| ||||| || ||| ||||||||||||| | Sbjct 41676 ATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 41617 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| || || | || ||||||||||||||||||||||||| |||||| ||||| Sbjct 41616 TGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 41557 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 || |||||| | | || | | ||| ||||||||||| ||||||||| |||||| Sbjct 41556 TTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGT 41497 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 ||||| ||||| || ||||| | || || | ||| || ||||| ||||| || |||| Sbjct 41496 TTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCA 41437 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 |||||| | || || || | || |||||| ||||| |||| ||||||| | ||||| Sbjct 41436 GTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATT 41377 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| ||| | || ||||| ||||| ||||| ||||||||||| || Sbjct 41376 TCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCA 41317 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650 ||||| ||| || |||||||| || || ||||||||||| ||| |||||||||||| Sbjct 41316 TTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGT 41257 Query 157651 AGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTGAA-ACAGAGTCACAG--AACTA 157706 ||| || || | || | || | ||||| ||||||| || | || | | ||||| Sbjct 41256 TCTCTTGTAACAT-CTAGTTTAATCCGTGA---AACTGAAGACGGCGTATCTGCTAACTA 41201 Query 157707 TGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTT 157766 |||||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 41200 CGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTT 41141 Query 157767 CGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCT 157826 || || | |||||||||||||| ||||||||| | | | ||||||||| | Sbjct 41140 TGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTT 41081 Query 157827 CGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 157886 || |||||||| ||||| || |||||||| ||||| || || || || || |||||||| Sbjct 41080 AGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATT 41021 Query 157887 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 157946 ||| | |||||||||||||||||||| || | ||||| |||| ||||||||| | || Sbjct 41020 TAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAA 40961 Query 157947 CACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158006 ||| ||||| || | | ||||| |||| | | ||||||||||| ||||| || ||||| Sbjct 40960 CACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAA 40901 Query 158007 CGCACACAACTTCCCACTGGAT 158028 ||| ||||||||||| || ||| Sbjct 40900 CGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 553 bits (612), Expect = 2e-152 Identities = 742/1026 (72%), Gaps = 5/1026 (0%) Strand=Plus/Plus Query 158761 CGAAGAGAGGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTG 158820 |||| ||||| | |||||| || |||| |||||| | ||||| ||||||||||| ||| Sbjct 37810 CGAA-AGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTA 37868 Query 158821 TTGGCTGGTCTGGACTTCTTCTTCTACCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTT 158879 |||| ||||| || ||| || || | ||| || || | |||||| |||| || ||| | Sbjct 37869 TTGGTTGGTCAGGCCTT-TTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTA 37927 Query 158880 ACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAG 158939 || || |||||||| | ||| |||||||| |||||| | || |||| ||| | || Sbjct 37928 ACAGGTACGACTTTTGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAA 37987 Query 158940 GGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTT 158999 || ||||| | || | |||||| || || ||||| | ||||||||| || | Sbjct 37988 GGATGTAACTTCTTAACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTA 38047 Query 159000 CTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGA 159059 | | | ||||| ||||| || ||||| |||||| | ||| | ||| |||| ||| Sbjct 38048 ATTTTATTATGGGGACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGA 38107 Query 159060 CTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT-CGCCA 159118 | ||| |||| | || || |||||||| |||| ||||||| ||| || || || || Sbjct 38108 TTATGGGCTTTTATAGCACTACACGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCA 38166 Query 159119 GTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 159178 || || | || ||||| | ||||| ||||| ||||| || ||||| |||||||| || Sbjct 38167 ATTCGAGATCGCTCGTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACC 38226 Query 159179 TATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTT 159238 |||||| || ||||| || ||| | || || || || || || | |||||||| || Sbjct 38227 TATTGCGGTATTTGTTTCTGTATTCTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTT 38286 Query 159239 CGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCA 159298 |||||| |||||||| || || || ||| | || || | ||| ||||||| ||||| Sbjct 38287 CGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCA 38346 Query 159299 CAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACT 159358 || |||||||| || || |||||||||||||| || || || || |||| || ||| | Sbjct 38347 TAACTGGACACTTAATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATT 38406 Query 159359 TCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGC 159418 ||||||| |||||||| | |||||| ||||||||| ||| || ||||| || || Sbjct 38407 ATTATCTGCAATTCATGGAGCCACAGTAGAAAATACACTATTTGAAGATGGTGATGCTGC 38466 Query 159419 AAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGC 159478 |||||| || |||||| |||| ||| || || |||||||| ||||| || || Sbjct 38467 AAACACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACTTATTCGATGGTAACAGC 38526 Query 159479 AAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTT 159538 || | |||||||| || || || || | || || || ||||| || ||||||||||| Sbjct 38527 GAATAGATTCTGGTCTCAAATTTTTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTT 38586 Query 159539 CTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCT 159598 ||| ||||| ||||| ||||| | ||| |||||||| | |||| ||| ||||| | Sbjct 38587 CTTCATGTTATTTGTTCCTGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTT 38646 Query 159599 TGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCC 159658 || | ||| | | || ||||||||||| ||||||| | | || || |||||||| Sbjct 38647 AGCATTAAATTTAAGAGCATACGATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCC 38706 Query 159659 AGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTT 159718 |||||||||||| |||||||| || || || | | |||||||| | | | ||| | Sbjct 38707 AGAATTTGAAACTTTCTACACTAAAAATATCTTATTAAATGAAGGTATTAGATCGTGGAT 38766 Query 159719 GGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGG 159778 ||| | || ||||| |||||||| || | |||||||| || ||| ||||| | || Sbjct 38767 GGCTGCACAAGACCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGG 38826 Query 159779 TAACGC 159784 ||||| Sbjct 38827 AAACGC 38832 Score = 120 bits (132), Expect = 3e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 158199 TTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATA 158258 ||||| | ||||| || || |||||||| ||||||| || |||||| ||| |||| | Sbjct 18852 TTATCGACTGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGA-A 18910 Query 158259 TTAACT-ACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGA 158317 || || | ||||| | | ||| |||| || | ||||| || | |||| ||| Sbjct 18911 CTACCTTATTCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGT 18970 Query 158318 ACTGTTGATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTT 158377 ||| ||||||| ||| || || || |||| ||||||||| | |||| ||||| || Sbjct 18971 ACTATTGATCAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTA 19030 Query 158378 CTTACGTGTGTAGCATATCCAACATCTGATTGTGTTGTTGTTACTGATCAAGAGGAGAAC 158437 | || || ||||||||||| ||||||||||| || | || |||||||||| | Sbjct 19031 TTAACTTGCGTAGCATATCCTGCATCTGATTGTCAAATTTTAACAAATCAAGAGGATGAA 19090 Query 158438 CTTTA 158442 ||||| Sbjct 19091 CTTTA 19095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545233720052080