Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq5733 682 0.0 seq225 455 4e-123 >seq5733 Length=57551 Score = 682 bits (756), Expect = 0.0 Identities = 729/956 (76%), Gaps = 9/956 (1%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 177645 ATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAA 177704 | |||||||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 177705 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 177764 || || ||||| ||||| | || || |||||||| ||| | ||||||||| | || | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 177765 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 177824 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 177825 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 177882 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 177883 CATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTG 177942 | || ||||||||||| ||||||||| |||||| |||| ||||| || ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 177943 TTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTC 178002 | || | ||| || || || || |||||||| ||||| || |||| || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062 ||||| ||||| |||| ||||||| | ||||| ||||||||||| |||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGG 178122 ||||||||||||||||||| || ||||||||||| ||||| ||| ||||||||||| | Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182 | || ||||||||| | ||| ||||||||| || ||| || || ||| | ||| Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 178183 GTGAGACGACAGAAACTGAGTCCCAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGA 178240 |||| || ||| | | || | | ||||| |||||||| ||||||||||||||||| Sbjct 41231 GTGAAACTGAAGA--CGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 41174 Query 178241 AACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATC 178300 ||| || |||||||| || || || |||||||| || ||||| ||||||||||| || Sbjct 41173 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 41114 Query 178301 GTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTG 178360 ||||||||||| ||| | | ||||||||| | || |||||||| || || || ||||| Sbjct 41113 TTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTG 41054 Query 178361 GTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCA 178420 ||| || || |||||||| || |||||||||||| | || || |||||||||||||| Sbjct 41053 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCA 40994 Query 178421 GTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGC 178480 || | | || | ||||| ||||| ||||||| ||||| ||| | |||||||||| Sbjct 40993 ATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGC 40934 Query 178481 CGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGAT 178536 | | | || |||||||| ||||||||| | || || || |||||||| || ||| Sbjct 40933 TGATTTAGGTATGGAAGTAATGCACGAACGTAA-CGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 455 bits (504), Expect = 4e-123 Identities = 706/1003 (70%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 178951 GATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179010 ||||||||| | || || ||||| || || ||| | |||||||| || || || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTATT 37893 Query 179011 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTG 179069 |||| | || | |||||| |||| || ||| | || || || |||||||||| ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 179070 GTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGT 179129 ||| || ||||| | || ||| ||| | ||||| |||||| | || | ||| || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 179130 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 179189 || || || || | ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 179190 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 179249 || ||||| || ||| ||| |||| ||| ||||| ||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 179250 TGCCTTCGCCCTAATTGGATTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCGGTA 179308 ||| || | ||||||||||| || || ||||| || || | || ||||| | |||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 179309 TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTC 179368 | ||||| ||||| || ||||| || |||| |||||||| ||||| ||| |||||| Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 179369 TCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGA 179428 | || || || || |||||| | ||||||||||| || ||| ||||| ||||| || | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 179429 TCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACA 179488 | || |||| || | ||||||||||||||||| ||||||||||| || || || || | Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 179489 TGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTG 179548 ||||||| || ||||| || | || ||||| | | ||||| |||||||||| || | Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 179549 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTA 179608 |||| |||||| | | ||||||||| || ||||||||||| ||||| | | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 38492 Query 179609 CGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCG 179668 | ||| || || || ||||| ||||| |||||||| | || ||||| || || || | Sbjct 38493 CACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTG 38552 Query 179669 GGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGG 179728 | || | || || || |||||| | || ||||| | | | ||||||||||| | | Sbjct 38553 GTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAG 38612 Query 179729 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATT 179788 || | ||| |||| |||| || |||| |||| | ||| | | || || |||| Sbjct 38613 GTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATT 38672 Query 179789 TTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGA 179848 | || ||||||| | | || || |||||||| || || || || ||||| || || | Sbjct 38673 TCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 38732 Query 179849 ACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAA 179908 | || | | |||||||| | | | ||| |||| | || ||||||||||||| Sbjct 38733 ATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAA 38792 Query 179909 ACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 | || | |||||||| || || |||| |||| ||||| || Sbjct 38793 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38835 Score = 120 bits (132), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138520 GACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCC 138579 ||||||| |||||| | ||||| | || |||||||| ||| || |||| || || Sbjct 18857 GACTGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAACTACCT 18916 Query 138580 TACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTA 138639 || || || | | ||| | ||||| || |||||||| | | |||| || ||| | Sbjct 18917 TATTCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTACTATT 18976 Query 138640 GATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACT 138699 ||||| ||||| || || || | || ||||| ||| |||||| ||||| | | ||| Sbjct 18977 GATCAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTATTAACT 19036 Query 138700 TGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATA 138758 ||||||||||| || |||| |||||| |||| ||| | ||||||| ||||| || Sbjct 19037 TGCGTAGCATATCCTGCATCTGATTGTCAAATTTTAACAAATCAAGAGGATGAACTTTA 19095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605622903015160