Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq225 154 1e-31 >seq225 Length=49998 Score = 154 bits (170), Expect = 1e-31 Identities = 207/287 (72%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 |||||||| || || || || | | ||| || | || ||| ||||| || | ||| Sbjct 35550 TCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAATACTTCAAATACACCA 35491 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 ||| ||| |||| | ||||||| || |||||||| | |||||| || | || Sbjct 35490 TCTCCAACTTCTAAAATTGAAACATCAAATGTACCACCACCTAAATCAAAGATTAATA-- 35433 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || |||| || ||| |||| || | |||||| |||| || || || ||||||||| Sbjct 35432 -TCGTTTCATTTGCTT---TTTTGTCTAAACCATAAGCAAGTGCTGCTGCTGTTGGTTCA 35377 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 |||||||| | ||||| | | ||| ||||| | || || ||||| || ||||||| Sbjct 35376 TTAATAATACGTAAAACTTCTAAACCCGCAATCTTACCAGCGTCTTTCGTCGCTTGTCGC 35317 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || |||||||||||||||||||| || |||||||| || | |||||| Sbjct 35316 TGAGAATCGTTAAAATATGCAGGCACTGTAATAACTGCTTTTGTTAC 35270 Score = 141 bits (156), Expect = 7e-28 Identities = 224/323 (69%), Gaps = 15/323 (5%) Strand=Plus/Minus Query 85927 AAATCAATTAGAATATGGTTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTA 85986 |||||| || |||| |||||||| | |||||||||| ||||| || ||||| || Sbjct 35583 AAATCAGCTAAGATATATTTCATTATTGCAGAGTCAAAATCATCTCCACCTAAATGACTA 35524 Query 85987 TTACCACCTACTGCCAATGTTCTAAATACTCCATTTGAGATATTCATTAACGAAACATCT 86046 | |||| | ||| ||| | |||||| |||| | | | | | |||||||| Sbjct 35523 TCACCAGCAGTTGCTAATACTTCAAATACACCATCTCCAACTTCTAAAATTGAAACATCA 35464 Query 86047 AATGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCCATTTT 86106 ||||| ||| | ||||| ||| | | | || | ||| ||| |||| Sbjct 35463 AATGTACCACCACCTAAATCAAAGATTAATA------------TCGTTTCATTTGCTTTT 35416 Query 86107 TCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACA 86166 | | ||||||| || ||||| |||||||| |||||||||||||| || | ||| Sbjct 35415 T---TGTCTAAACCATAAGCAAGTGCTGCTGCTGTTGGTTCATTAATAATACGTAAAACT 35359 Query 86167 TCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATAT 86226 |||||||||||||| ||| ||| || || ||||||| ||| | || ||||||||| Sbjct 35358 TCTAAACCCGCAATCTTACCAGCGTCTTTCGTCGCTTGTCGCTGAGAATCGTTAAAATAT 35299 Query 86227 GCTGGTACAGTAATAACTGCTTT 86249 || || || |||||||||||||| Sbjct 35298 GCAGGCACTGTAATAACTGCTTT 35276 Score = 136 bits (150), Expect = 3e-26 Identities = 316/471 (67%), Gaps = 23/471 (5%) Strand=Plus/Minus Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 ||||||||||| || || | ||||||||| || || ||||| || || ||||| |||| Sbjct 36316 AAGAATACCATCTGCGTCAATATCAAATGTTACCTCGATTTGTGGTACACCTCTAGGAGC 36257 Query 281497 AGGTGGGATCCCTTCCAAATT--AAATGTTCCCAGATTATTATTATCTTTAGTGAATTTT 281554 | | || |||||| || ||||| || | | | ||||||||| | | | Sbjct 36256 CGCCGAAATAT-TTCCAAGTTCGAAATGG-CCTAAACTTTTATTATCTGAGGCAAGTAAA 36199 Query 281555 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 281614 |||||||| | | | |||||| ||| | |||||||||| | ||||| |||| Sbjct 36198 CGTTCACCTTGTAGTACATGGATATCTACTTTTGGTTGATTATCTTCAGCAGTTGAAAAT 36139 Query 281615 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 281674 | | |||| || ||||||||||||||||| ||||| || | ||||| | ||| Sbjct 36138 GTTTCTGTTTTTGTAGCTGGAATTGTTGTGTTTCTTTCAATCATTCTAGTCATTAGACCT 36079 Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734 || |||||| | || | ||| | ||| || ||||| | || | || | | Sbjct 36078 CCGATTGTTTCAACTCCTAAAGATAAAGGTGTTACATCTAATAATAAAACA--------T 36027 Query 281735 TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 281794 ||| ||| | ||| | |||| || | | ||||||||| ||| ||||||| || Sbjct 36026 CTTTGATC----TCGCCAGCTAGAACCGCGCCATTAATAGCAGCTCCAACTGCAACAACT 35971 Query 281795 TCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA--AGAAGTT 281852 ||||| |||||||| ||| ||| |||||||| | || || |||||| || || Sbjct 35970 TCATCGGGATTAACTGTTAAATTAGGTTTTTTA--AATGTTAATTTTTGAACTAGCTCTT 35913 Query 281853 GTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 | | | ||| |||||||| || ||||||||||| | | ||||| || Sbjct 35912 GGATAGC---AGGGATACGAGAAGAACCTCCAACTAAAATCACTTCATTCA 35865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740343140626326