Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4035 95.1 3e-14 >seq4035 Length=10978 Score = 95.1 bits (104), Expect = 3e-14 Identities = 220/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 |||||||||| || | || ||||||||| | ||||| || || | | || | | | Sbjct 7651 CATTTGCTATTTACATTGAGCCTTGGCATGCGGATATCTTCGAGGTGCTTGACTTAAGGA 7592 Query 110815 AAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAG 110874 | || || || |||||| | || || || | ||||| | | |||||| | | Sbjct 7591 AGAACCATGGGAAGGAAGAAGCCCGGGCGCGCGACCTCTTTTACGGGCTTTGGATTCCCG 7532 Query 110875 ATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTT 110934 |||| || ||||| | || | ||| |||| || ||||| || ||||||||| ||| | Sbjct 7531 ATTTGTTTATGAAGAGAGTGGAGGAAGATGGGATTTGGTCACTGATGTGTCCTGATCAGT 7472 Query 110935 CTCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 |||||| | || ||| |||| ||||||||||| | ||| || |||| ||| Sbjct 7471 GTCCTGGCTTGGGCGACTGTC-ATGGCAAAGAGTTTGAGGTCCTGTATCTGCAATACGAA 7413 Query 110994 AAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAA 111053 |||| || || | || | | | || ||||| || |||||| ||||| || Sbjct 7412 AAAGCTGGGAAAGTAAAAAAGACAGTGCGTGCGCAAGACCTGTGGTTCGCCATCCTGGAC 7353 Query 111054 TCACAAGTTGAAACTGGAACTCCTTATAT 111082 ||||| | ||||| || || |||||||| Sbjct 7352 TCACAGATCGAAACGGGCACGCCTTATAT 7324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186723829465811