Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2518 98.7 7e-16 seq159 84.2 1e-11 >seq2518 Length=13831 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| ||||||||||| || || ||| || || ||||| || || || Sbjct 5328 CCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGAC 5269 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| ||| || || || || || | ||||||||||| | || Sbjct 5268 AGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGG 5209 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || ||| || | || | ||||||||| | ||||| Sbjct 5208 ATGCCCTCCTTGTCCTGGATCTTTTGCTTC-ACGTTCTCGATGGTGTCGCTGGGCTCCAC 5150 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||| ||||| Sbjct 5149 ATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 5102 >seq159 Length=12779 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || || || ||||| |||| |||| || || || ||||| Sbjct 10510 CTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAA 10569 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | ||||| ||||| || || || ||| |||| Sbjct 10570 GATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTTC-ACAT 10628 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||||| | || || || | ||||| || || || || | || || | Sbjct 10629 TCTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGA 10688 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 10689 CGAAGATCTGCAT 10701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328680560425920