Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq5733 627 3e-175 >seq5733 Length=57551 Score = 627 bits (694), Expect = 3e-175 Identities = 687/904 (76%), Gaps = 12/904 (1%) Strand=Plus/Minus Query 19584 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCA 19643 |||| || | ||||||||| || || ||||| || || || ||||| || || ||||| | Sbjct 41777 CAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTA 41718 Query 19644 TCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 |||| ||||| || | || ||| | || ||||||||||| || | || || || Sbjct 41717 TCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTA 41658 Query 19704 TTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTG 19763 |||| || || || || || | |||||||||||| ||||||||||| || | | Sbjct 41657 TTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAG 41598 Query 19764 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCA 19823 | || ||||| |||||||| || || | ||||||||| || || |||||| | | || Sbjct 41597 ACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 41538 Query 19824 T--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTG 19881 | || |||| |||||||||| || |||||||||||||| || |||| ||| | ||||| Sbjct 41537 TAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 41480 Query 19882 GATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCC 19941 ||||| || || | ||| ||||| || || || || ||||| || || | || ||||| Sbjct 41479 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCC 41420 Query 19942 GTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTA 20001 |||| || ||||||||||| |||| ||||||||| ||||| || ||||| ||||||| Sbjct 41419 AATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTT 41360 Query 20002 CATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGT 20061 |||||| ||||||||||| ||||| |||||||| |||||||| ||||| ||| |||||| Sbjct 41359 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 41300 Query 20062 GGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTC 20121 |||||||| || ||||| || |||||||||| ||||||||||| ||||| || | || Sbjct 41299 TGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACAT-CTA 41241 Query 20122 GCTT-GTGCGTGAGACTACTGAACA-GGAAAGTCAG--AACTATGGTTACAAGTTTGGGC 20177 | || | ||||| |||||| | || || | ||||| |||||||| || || | Sbjct 41240 GTTTAATCCGTGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGAC 41184 Query 20178 AAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCC 20237 |||||||||| || || ||||||||||| || || ||||||||||||||||| ||||||| Sbjct 41183 AAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCC 41124 Query 20238 AATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 20297 ||||||| ||||||||| ||| || ||||||||||| | ||||| ||||| || | Sbjct 41123 AATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTG 41064 Query 20298 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCA 20357 |||| || ||||| |||| | || ||| ||| ||||| ||||| | |||||||||| Sbjct 41063 TAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCA 41004 Query 20358 ACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTC 20417 |||| ||||| || || | || | | |||||||| || | ||||||||||||||| Sbjct 41003 ACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTA 40944 Query 20418 TCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCAC 20477 |||| |||||| || | || | || || ||||| ||||| || || || |||||||| | Sbjct 40943 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 40884 Query 20478 TTGA 20481 | || Sbjct 40883 TAGA 40880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148818459281958