Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq5733 610 2e-170 >seq5733 Length=57551 Score = 610 bits (676), Expect = 2e-170 Identities = 683/905 (75%), Gaps = 12/905 (1%) Strand=Plus/Minus Query 28712 CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCA 28771 |||| || | ||||||||| || || ||||| || ||||| ||||| || || ||||| | Sbjct 41777 CAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTA 41718 Query 28772 TCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCG 28831 |||| ||||| || |||||| ||| | || ||||||||||| || | || || || Sbjct 41717 TCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTA 41658 Query 28832 TACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTG 28891 | || || || || || || | |||||||||||| ||||||||||| || | | Sbjct 41657 TTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAG 41598 Query 28892 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCG 28951 | || ||||| |||||||| || || | ||||||||| || || |||||| | | || | Sbjct 41597 ACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTG 41538 Query 28952 T--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTG 29009 | || |||| |||||||||| || |||||||||||||| || |||| ||| | || || Sbjct 41537 TAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTG 41480 Query 29010 GATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCC 29069 ||||| || || | ||||||||| || || || |||||||| || ||| | || ||||| Sbjct 41479 GATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCC 41420 Query 29070 ATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTA 29129 | | || |||||| || || | |||||||| |||||||| || || ||||||| Sbjct 41419 AATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTT 41360 Query 29130 CATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGT 29189 |||| | || |||||||| ||||| |||||||| |||||||| ||||| ||| || || Sbjct 41359 CATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGT 41300 Query 29190 TGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTC 29249 |||||| ||||| ||||| || |||| ||||| ||||||||||| ||||| || | || Sbjct 41299 TGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACAT-CTA 41241 Query 29250 GCTT-GTGCGTGAGACGACTGAAGA---CATCTCTCAGAACTATGGTTACAAGTTTGGAC 29305 | || | ||||| |||||||| | | ||| ||||| |||||||| || |||| Sbjct 41240 GTTTAATCCGTGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGAC 41184 Query 29306 AAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCC 29365 |||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 41183 AAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCC 41124 Query 29366 AATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 29425 |||| || |||||| || ||| || ||||||||||| | ||||| ||||| || | Sbjct 41123 AATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTG 41064 Query 29426 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTA 29485 |||| || ||||| |||| | || ||| ||| ||||| ||||| | |||||||| | Sbjct 41063 TAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCA 41004 Query 29486 ACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTC 29545 |||| ||||| || || | || | | |||||||| || || ||||||||||| || Sbjct 41003 ACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTA 40944 Query 29546 TCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCAC 29605 |||| || ||| | | || | ||||||||||| || ||||| || || |||||||| | Sbjct 40943 TCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTC 40884 Query 29606 TTGAT 29610 | ||| Sbjct 40883 TAGAT 40879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146655409582446