Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq5733 614 2e-171 >seq5733 Length=57551 Score = 614 bits (680), Expect = 2e-171 Identities = 726/977 (74%), Gaps = 6/977 (1%) Strand=Plus/Minus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || || ||||| |||||| | || ||||| ||||| || | ||||| || Sbjct 41847 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 41788 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | ||||||| | || ||||| || || ||||| || |||||||| ||||| Sbjct 41787 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 41728 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCG 18912 || ||||| ||||| || || || || || ||| | || ||||||||||| || | Sbjct 41727 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 41668 Query 18913 GGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 || || || |||| || || || || || | |||||||||||| ||||||||||| Sbjct 41667 GGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 41608 Query 18973 AATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTC 19032 || | || || ||||| |||||||| || || | ||||||||| || || |||||| Sbjct 41607 GCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 41548 Query 19033 CTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGA 19090 | | || || || |||| |||||||||| || |||||||||||||| || |||||| Sbjct 41547 TTATTAGGTGTAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGA 41490 Query 19091 TGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCC 19150 |||| |||||||||| || || | ||||||||| || || ||||| ||||| || ||| Sbjct 41489 TGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCT 41430 Query 19151 TTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTA 19210 | || || ||| |||| |||||| ||| || | ||||||||| |||||| ||||| Sbjct 41429 TAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTA 41370 Query 19211 CGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACA 19270 | ||||||| |||| | |||||||| || ||||| ||||| || |||||||| ||||| | Sbjct 41369 CTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATA 41310 Query 19271 TGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTG 19330 || ||||| ||||||||||| || || || |||| ||||| ||||||||||| |||| Sbjct 41309 TGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTG 41250 Query 19331 TTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAG 19389 | || || | | || | ||||||||| || | |||||| ||||| || ||||| Sbjct 41249 TAACATC-TAGTTTAATCCGTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAA 41191 Query 19390 TTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTT 19449 || || ||||||||||| ||||| ||||| || ||||| || || || ||||| || | Sbjct 41190 TTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTA 41131 Query 19450 ATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGG 19509 || ||||| ||||| |||||||| ||| || |||| ||||| || ||||| ||| Sbjct 41130 ATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGG 41071 Query 19510 CCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAAT 19569 || || || || || ||||| | || ||||| || || || |||||||| ||||| || Sbjct 41070 CCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAAC 41011 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || || ||||| ||||| || || |||| | | |||||||| || | ||||||||| Sbjct 41010 GGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCT 40951 Query 19630 GACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAAC 19689 |||||| |||| |||||| | | || | || ||||||||||||||||| || || ||| Sbjct 40950 GACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAAC 40891 Query 19690 TTCCCACTTGATTTGGC 19706 ||||| || ||||| || Sbjct 40890 TTCCCTCTAGATTTAGC 40874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141138992893158