Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4035 165 8e-36 seq3524 132 5e-26 seq159 86.0 6e-12 >seq4035 Length=10978 Score = 165 bits (182), Expect = 8e-36 Identities = 569/869 (65%), Gaps = 29/869 (3%) Strand=Plus/Plus Query 147461 CGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATTTCG 147519 |||| || |||| || || || ||| ||| |||| | ||| | ||||| | || || Sbjct 7190 CGATCGAGGCCAAGTTACACACAGCCACCTCCTCGGGGCTCG-TATACTGGATAATCTCC 7248 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | ||||| ||| || | || || ||||||||||||||||| || |||| ||| Sbjct 7249 GTGCACAAGTTCGAGCTTCGAATCGTCCCTAAATTTTGCTGATTGCTCTTAAGATTACAC 7308 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AAC 147636 ||||||||||||||||| || || ||| || |||| || | || | ||| ||| Sbjct 7309 GCGTCTTTGAAGAGCATATAAGGCGTGCCCGTTTCGATCTGTGAGTCCAGGATGGCGAAC 7368 Query 147637 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCT-CGTTTTCGTACCGCTC 147695 | |||||| ||||| ||||| || || ||| | |||||||| || Sbjct 7369 CA---CAGGTCTTGCGCACGCACTGTCTTTTT-TACTTTCCCAGCTTTTTCGTATTGCAG 7424 Query 147696 GTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACA 147755 |||| ||||||||| | ||| | || ||| | | ||| |||||||||| ||||| Sbjct 7425 ATACAGGACCTCAAACTCTTTGCCATGACAGTCGCCCAAGCCAGGACACTGATCAGGACA 7484 Query 147756 CATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAG 147815 |||||| ||||| || | || | | || | |||||||| ||| || | ||| || Sbjct 7485 CATCAGTGACCAAATCCCATCTTCCTCCACTCTCTTCATAAACAAATCGGGAATCCAAAG 7544 Query 147816 CGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGT-TTCAAATTAA 147874 | |||| | || |||||||| | || || |||||| | | | | || | || Sbjct 7545 CCCGTAAAAGAGGTCGCGCGCCCGGGCTTCTTC-CTTCCCATGGTTCTTCCTTAAGTCAA 7603 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 |||| |||| || || ||||| || |||||||| | || | || || |||| Sbjct 7604 GCACCTCGAAGATATCCGCATGCCAAGGCTCAATGTAAATAGCAAATGCTCCCGGTCGCT 7663 Query 147935 T---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCA 147991 | ||| ||||| ||||||| || | | || |||||| |||| |||||| ||| Sbjct 7664 TCCCTCCCCCCTGATCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGGCACCA 7723 Query 147992 GGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTTCGTGC 148050 ||| | || || || || ||||| | ||| ||| | || || | | |||| Sbjct 7724 AGCCATTACTCGTTCCCTTCGTTCCTTTGATGTACGCT-CCGTGCGCGCGAATGTTGTGC 7782 Query 148051 ACGTTAACGCCAAT----GCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGT 148106 || | |||||| |||||||| |||| ||| | ||||| | ||| || Sbjct 7783 ACAGACAAGCCAATCCCACCCGCCGCCTTACT----GATGACCGCGCACTGTTTCAAGGT 7838 Query 148107 CGTGTAGATGCCGTCGAT-GCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTT 148165 ||||| || | || | || || | ||| | ||||| ||| |||| | Sbjct 7839 GTCATAGATCCCCACAATCGAATCCGCCTTCATAGTTAAG-AGGAAACATGAAGACATCT 7897 Query 148166 GCGGAATCCGCGTTCCCGCCGAGAAA-AGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 | || | |||| ||||| || |||| | ||||| |||||| ||||| | || | | Sbjct 7898 GGGGGAAACGCG-TCCCGGCGTGAAATAAAGTGGGCGACGCGTGAATAAACCACTTATTA 7956 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||||||| ||||||||| | || | || | ||| | || ||||| |||||||| Sbjct 7957 CTCATCAATTCATACGTCTCGAGCGCCGCCTCTAAGTCATTTCCATGAATCCCCAGCGCC 8016 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||| | ||| | |||||| || || Sbjct 8017 ACGCGCATCAACATATACTGTGGGCGCTC 8045 >seq3524 Length=35516 Score = 132 bits (146), Expect = 5e-26 Identities = 971/1540 (63%), Gaps = 71/1540 (5%) Strand=Plus/Plus Query 146904 AAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTC 146963 ||| |||||||||||||| || | ||||| ||| ||||| ||||| | ||||| Sbjct 10537 AAATTCGCCCGCCAGCACGCGGCGCGAATACATGTTGGACGTGAAGGGCTCCACGGACTC 10596 Query 146964 ATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATT 147023 || ||||| | ||||||||||||| ||||| |||||| ||||| || || ||||| Sbjct 10597 GTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGGAATT 10656 Query 147024 TCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGG 147083 |||| || | | | ||| ||| | || ||| ||||| || ||||| Sbjct 10657 GCGCACGCCATGCTCCTGGACTTTGACGCGCAGGCCGGCCCAATCCCAGCGCGTGGAGGG 10716 Query 147084 CGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGT 147143 |||||| |||||||||| |||||| || || ||| ||| || | ||| || Sbjct 10717 GGTCACGCCCCACATGTCGAACTGGAAGACGCCCTTGCTGATGGGCGAACCGGAGAAGGT 10776 Query 147144 AGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATAT 147203 ||| || || | || | ||| | || |||| || || |||| || Sbjct 10777 CTCGTACGGGCCCTCCTTCATTGCGATTTCCATGGAGGCTTCGACGGCGCCGAAGTACAT 10836 Query 147204 GGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATA-CGCA 147262 ||| ||| || | || || || | ||| ||| | |||| |||| || |||| Sbjct 10837 GGTCTCGAAGACGTCCTTATTCAGCTGGAGCGCGTCTGCCGACTCG-AAGGGGTAGCGCA 10895 Query 147263 GAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGT 147322 | || ||||| ||||| ||||| | |||| ||||| || | |||| || Sbjct 10896 TTTTGATGAACGCATCCGCCAAGCCCTGCACGCCGATGCCGACGGGCCTATGCCGCATGT 10955 Query 147323 TGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTA 147381 || |||||| || ||| | | ||| || |||| || |||| ||||||||| Sbjct 10956 TGGAGCGCTTAGC-CTCTTCCACGGGGTAAAAGTTGATGTCGATAACACGGTTGAGGTTG 11014 Query 147382 CGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACA 147441 ||| || || || || || | ||| || | ||||||| | ||| || Sbjct 11015 CGCGTCACCACCTTGGTGATCTCGTAGAGGCGCTGTAGGTCATAAGAGGGGGCTT-TACC 11073 Query 147442 CGTACGCATTGGTT-------CACG---GC---------GATAGACGCCAGATTGCAGAC 147482 | | |||||| |||| || || ||| || || |||||||| Sbjct 11074 GCTGCCAGTTGGTTCCTCCCGCACGAACGCCGAGAGGTTGACAGAGGCAAGGTTGCAGAC 11133 Query 147483 GGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 ||| ||| || |||| || | |||| | ||| || | |||||||||| | || | Sbjct 11134 GGCAACCTCATCGGGCGCCG-TATACTCGATGATCTCCGTGCACAGGTTGGAAGACTTGA 11192 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 | ||||||| ||| ||||| || || ||||||| || || ||||||||||| || | Sbjct 11193 TAACTCCCAGATTCTGCTGGTTCGACTTGAGATTGCAGGCATCCTTGAAGAGCATATAGG 11252 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTC---AACGATAAACCTATGCAGGTCCTGCG-CTCG- 147656 | ||| ||||| || || | || || ||||| ||| | ||| | || | Sbjct 11253 GCGTGCCCGTCTCCACCTGTGAGTCCAACACCGCAAACC---ACAGCTGCTGGGCCTTGA 11309 Query 147657 -CACC---CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACT 147712 |||| ||| ||| | || | ||| || |||||| ||| |||| | ||| ||| | Sbjct 11310 TCACCTTGCGC-GCC--TTGC--CACTC-TTCTCGTACGTCTCATACAGCTGCTTAAATT 11363 Query 147713 CGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGT 147772 | || || | || || ||||| || |||| | || || | ||| ||||| || Sbjct 11364 CCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAGAACAGAGACCA---GT 11420 Query 147773 CGTCCGCGTT---AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGAT 147829 || | |||| ||||| |||| |||||||| ||| ||| || ||||| | | | Sbjct 11421 CGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAGGGCGTAGAACAAGT 11480 Query 147830 CGC--GCGCTTTGCA-ATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAG 147885 ||| || | | || || | | || | ||||| || || | | || | | || Sbjct 11481 CGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTGCG---CAGATCCAGGAACTCGA-AG 11536 Query 147886 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCC 147942 || |||||||||||||| || | ||||| ||| | | || || ||||| || ||| Sbjct 11537 ATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTTGCCCCCACCC 11596 Query 147943 TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCA 148002 ||||| || | ||| || ||| ||| || || |||| |||||| | | |||| | | Sbjct 11597 TGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATGCCGTTGGAG 11656 Query 148003 GTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCA 148062 || ||||| | | | ||| | | | || || || | | || | || ||| Sbjct 11657 GTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTATGGATCGAGACACCA 11716 Query 148063 ATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGC---CCAATGTCGTGTAGATGCCG 148119 || || || || |||| || ||||| || | || || | |||| ||||| ||| Sbjct 11717 ATCCCACCTGCGAACTTGGAGATGGCCGCAC-ATTGCTTGAGAGTGTC--ATAGATACCG 11773 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 |||||| ||| | || | | || | || || || | | ||||| | |||| Sbjct 11774 TCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCGCGGCGTG 11833 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || ||| || || || | ||||| || || | || || ||| | || Sbjct 11834 CCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGAGATTGTAG 11893 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 |||||||| || | || | ||| || || || || | || |||||||||| |||| Sbjct 11894 GTCTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATGGCTACGCGCATGATCATG 11953 Query 148300 TGCTGTGGTCGTTCGGCAACTTGAT--TGTTGATCTTGAGAAGATATCCATTTTCGAGGG 148357 ||||| ||||| || || ||| || |||||||| || || || || || | Sbjct 11954 TGCTGGGGTCGCTC--CATGACGATGCCGTCCATCTTGAGCAGGTAGGACTTCTCCAGCG 12011 Query 148358 TTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTA 148397 | ||| |||| || || | || || || ||| | || || Sbjct 12012 TCTTGAAACCGAAATAGTCATAGTCGAAGTCTCGATCATA 12051 >seq159 Length=12779 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| ||||| || | | ||||| || |||||||||||||| | || Sbjct 10481 CGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTG 10540 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || || | | |||| || ||||| ||||| || || || ||| Sbjct 10541 CGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGGATCCCT 10600 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || ||||| |||| | || | || ||| | ||||| || || | Sbjct 10601 TCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACATCTAGG 10660 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || ||||| || || | ||| ||||||||| || Sbjct 10661 GTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGCT 10705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476576341848360