Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3524 230 3e-54 seq332 120 4e-21 seq5709 113 6e-19 seq4035 109 8e-18 seq2878 109 8e-18 seq2396 86.0 9e-11 >seq3524 Length=35516 Score = 230 bits (254), Expect = 3e-54 Identities = 381/540 (71%), Gaps = 20/540 (4%) Strand=Plus/Minus Query 262876 CGCTGGGACTGGGACGCACTGCGGGCGTCG--GTTCGACAGCATGGCCTGCGCAACTCGT 262933 |||||||| |||| || ||||| |||| || | |||||||| ||||||| || Sbjct 10707 CGCTGGGATTGGGCCGGCCTGCG--CGTCAAAGTCCAGGAGCATGGCGTGCGCAATTCCC 10650 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||||| ||||||||| ||| | ||| | || ||||||||||||| |||| | Sbjct 10649 TGCTGCTGGCGCCCATGCCCACCGCCTCCACGGCCCAAATCCTGGGCAACAACGAGTCCG 10590 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 | ||| | ||||| |||||| || ||||||||||||| ||||||| |||||| | | Sbjct 10589 TGGAGCCCTTCACGTCCAACATGTATTCGCGCCGCGTGCTGGCGGGCGAATTTACCATCG 10530 Query 263054 TCAACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGC 263112 ||||| ||||| || ||| | || | | ||||||||| |||| |||| | ||| Sbjct 10529 TCAACAAGTACCTGCTCG-GCGACCTGATCGAGCGCGGCCTTTGGAATGCCGAGGTCCGC 10471 Query 263113 GACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCC 263172 ||| | |||| | | |||||||||||| | | | | || | | || | Sbjct 10470 AACCAGATCATGGGTAATCGCGGCTCGGTGCAGAACGTAG----CAAGCA--TCCCCCGT 10417 Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT---GCCCAACCGGGTGACCATTGAT 263229 || ||||| | || | ||||||||||||||| | || || | || ||| || Sbjct 10416 GAGCTCAAAGAGCTATATAAGACCGTGTGGGAGATCCGGCAGAAGTGCGT---CATCGAC 10360 Query 263230 ATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCC 263289 |||||||||||||||| | |||| | ||| |||||| ||||| | |||| ||| Sbjct 10359 ATGGCGGCCGACCGCGGGGCCTACATTTGCCAATCCCAGTCCCTCAATATTCACCTGGCC 10300 Query 263290 GACCCGACGGCCG-AGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 | || ||| ||| ||| |||| || |||||| ||| | ||| || ||||| Sbjct 10299 AATCCCACGCCCGCCCAGC-TCACCTCCATGCACTTTTATTCCTGGAAGAAGGGACTCAA 10241 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| ||||||||||| ||||||||||| ||| ||| ||||||| || ||||| ||||| Sbjct 10240 GACCGGCATGTACTACCTGCGCACCCGCCCCAAGGCCGACGCCATCCAGTTCACGGTCGA 10181 Score = 183 bits (202), Expect = 4e-40 Identities = 298/426 (70%), Gaps = 25/426 (6%) Strand=Plus/Minus Query 259762 GTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGGCCCCAGTATATGCTCATGCG 259821 |||||||||| ||| || || || ||| | ||||| |||||| | ||| ||||||| Sbjct 12001 GTCCTACCTGCTCAAGATGGACGGCATCGTCATGGAGCGACCCCAGCACATGATCATGCG 11942 Query 259822 TGTCGCCCTTGG---CCATTATGGGTTTGCCGACGTCGACAATGCGCTGGAGCACGTGCT 259878 || ||| |||| |||| | | | ||||| ||| ||| | ||| Sbjct 11941 CGTAGCCATTGGAATCCATAAGGAG------GACGTGGACGCGGCGATTGAG-------- 11896 Query 259879 CGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTA 259937 |||||| | |||||| ||| || | ||||| ||| || ||||| || ||||| | Sbjct 11895 ----ACCTACAATCTCATGTCCCAGAAGCTCTTCAC-TCACGCCACGCCTACACTCTTCA 11841 Query 259938 ATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATT 259997 | |||||||||||||| |||||| || || ||||| || || |||||||| || | Sbjct 11840 ACGCCGGCACGCCGCGGCCGCAGCTCTCCTCCTGCTTCCTTCTGACCATGAAGGAGGACT 11781 Query 259998 CGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCG 260057 | ||||| || ||||||||||| |||||||| || ||| |||||||||| || || | Sbjct 11780 CCATCGACGGTATCTATGACACTCTCAAGCAATGTGCGGCCATCTCCAAGTTCGCAGGTG 11721 Query 260058 GCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCG-GGCGCCTACGTGGCGGGCACCAAC 260116 | || ||| | | || || | || | |||| | | | ||| | ||| | ||| Sbjct 11720 GGATTGGTGTCTCGATCCATAACATCCG-GGCGCGTGACTCGTACATCCGTGGCTCAAAC 11662 Query 260117 GGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTC 260176 || ||||||||| | ||||||||||| || || || ||||||||||| |||||||| Sbjct 11661 GGGACCTCCAACGGCATCGTGCCCATGCTGCGTGTCTTCAACGACACGGCCCGCTACGTG 11602 Query 260177 GACCAG 260182 |||||| Sbjct 11601 GACCAG 11596 Score = 122 bits (134), Expect = 1e-21 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || || ||||||||||||||| | || ||| ||||||||| || ||||||||||| || Sbjct 11595 GGTGGGGGCAAGCGCAAGGGCTCTTTCGCCATCTACCTGGAGCCCTGGCACGCCGATATC 11536 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | ||||| || |||||||||||||| ||| |||| ||| || ||| Sbjct 11535 TTCGAGTTCCTGGATCTGCGCAAGAACCACGGCAA-TGAGCTGGAG---CGG--GCCCGC 11482 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || | || |||| ||| |||||| || ||||| |||| ||| ||| || || | || Sbjct 11481 GACTTGTTCTACGCCCTCTGGACGCCTGATCTGTTCATGCAGCGCGTGGAGAACGACGGC 11422 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTG 262006 |||||||| || || ||||| |||| || |||||| Sbjct 11421 GACTGGTCTCTGTTCTGCCCCAACGAGTGCCCTGGCCTG 11383 >seq332 Length=2924 Score = 120 bits (132), Expect = 4e-21 Identities = 170/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 724905 TCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC 724964 |||| ||||||||||| |||||||||||||||||| || | | ||| ||||| Sbjct 1789 TCCTACATCTACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGT-----ATC-TCCAAG 1842 Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 | |||| ||| ||||||| || || ||||| |||||||| ||| ||| ||| Sbjct 1843 CGTGGCGTGTCCATCTTGAACTCCTTCATCGGTGACATCTTCGACCGCCTCGCCACAGAG 1902 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||||| ||||| |||| || |||| || || | |||||| | ||||| Sbjct 1903 GCCGGCAAGCTGGCCCGCTACACCAAGAAGTCTACCCTCTCTTCCCGCGAGGTGCAGACG 1962 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||||| | | | | ||| || ||||||| |||||| |||||||||||||||| Sbjct 1963 GCAGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 2020 >seq5709 Length=14106 Score = 113 bits (124), Expect = 6e-19 Identities = 171/240 (71%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 724905 TCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC 724964 |||| ||||||||||| |||||||||||||||||| || | | ||| ||||| Sbjct 12114 TCCTACATCTACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGT-----ATC-TCCAAG 12167 Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 | |||||||| | || || || | |||||| |||||||| ||| ||| ||| Sbjct 12168 CGTGGCGTGTCGATCTTAAATTCCTTCATTGGCGACATCTTCGACCGCCTCGCCACTGAG 12227 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGA 725082 ||||| ||||| |||| || ||| | || | || | |||| || | |||| Sbjct 12228 GCCGGCAAGCTGGCCCGCTACACGAAGAAGTCTACCCTGTCTTCCCGCG--AGGTGCAGA 12285 Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || ||||| | | | | ||| || ||||||| ||||||||||||||||||||||| Sbjct 12286 CAGCTGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 12345 >seq4035 Length=10978 Score = 109 bits (120), Expect = 8e-18 Identities = 185/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 ||| ||||||| | ||| | ||||| |||| ||| |||| || || || || || Sbjct 7937 GCGTCGCCCACTTTATTTCACGCCGGGACGCGTTTCCCCCAGATGTCTTCATGTTTCCTC 7878 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 || |||||||| |||||||| | ||| ||||||||||| | || ||||||||| || Sbjct 7877 TTAACTATGAAGGCGGATTCGATTGTGGGGATCTATGACACCTTGAAACAGTGCGCGGTC 7818 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||| |||||||| || || || || || | | ||||| | ||||| || || Sbjct 7817 ATCAGTAAGGCGGCGGGTGGGATTGGCTTGTCTGTGCACAACATTCGCGCGCACGGAGCG 7758 Query 260099 TACGTGGCGGGCACCAACGG--CCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 ||| | || || || || | ||| || ||| | ||||||||||| || || ||| Sbjct 7757 TACATCAAAGGAACGAAGGGAACGAGT--AATGGCTTGGTGCCCATGCTGCGTGTGTTTG 7700 Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182 ||| || || || || ||||| ||| Sbjct 7699 ACGTGACTGCTCGGTATGTCGATCAG 7674 >seq2878 Length=6153 Score = 109 bits (120), Expect = 8e-18 Identities = 143/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 1455755 TTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTG 1455814 |||||| | | |||| | ||| ||||| |||||| | ||| | |||||||| || || Sbjct 5472 TTCCCCCGGCACCACCA-CAGATCTGGGACATGTACAAGCAAG-CTGAGGCCTCTTTCTG 5529 Query 1455815 GACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGA 1455874 ||| || |||||| | ||||| | | ||||| | |||||| | ||| |||| | Sbjct 5530 GACGGCGGAGGAGCTGGACCTGGCCCACGACAAGACTGACTGGGAGAAGCTTTCCGACAA 5589 Query 1455875 CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGG 1455934 ||||| |||||| || ||||||||||||| || |||||||| |||||| ||||| Sbjct 5590 GGAGCGTCATTTCGTCTCGCACGTCCTCGCC-TTCTTCGCCGCGTCCGATGGGATCGTTA 5648 Query 1455935 CCGAGAACCTGGCC 1455948 ||| ||||||||| Sbjct 5649 ACGAAAACCTGGCC 5662 >seq2396 Length=60920 Score = 86.0 bits (94), Expect = 9e-11 Identities = 126/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 1817561 CCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAGT 1817619 ||||||| || || ||| ||| |||||||| || | |||||||| |||||||| || | Sbjct 23853 CCTCGGCACGGGCCTCTTCAGTCTGGGGCAGGTGCATATTCATCTCATCGCCGTCGAAAT 23912 Query 1817620 CGGCATTGTA-GGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATGGGC 1817678 |||||||||| ||||| | |||| | |||||| || | ||| || | ||||||| | Sbjct 23913 CGGCATTGTAGGGTGCGC-AGACGCACTCGTTGAAGCGGAAGGTGCGCCAGGGCATGACC 23971 Query 1817679 ACCACCTTGTG---CATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTT 1817728 || ||| |||| |||||| | |||| | |||||||||||||| Sbjct 23972 TTGACGCGGTGGGCCATG---ATGGAGAGCTTGTGCAAAGAGGGCTGCCGGTT 24021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177246860295862