Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2518 149 6e-31 seq35 136 4e-27 seq159 116 3e-21 >seq2518 Length=13831 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||||||| | ||| |||||| || ||||| || || | | Sbjct 5328 CCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGAC 5269 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| ||||| ||||| ||||| || || | |||||||| |||| ||| Sbjct 5268 AGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGG 5209 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||||||||||| | | | |||||||| | ||||| Sbjct 5208 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACA 5149 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||||| || || || || || ||||| Sbjct 5148 TCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 5102 >seq35 Length=30318 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 12433 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 12492 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 12493 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 12552 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | ||||| |||| |||||| || Sbjct 12553 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATGGT 12612 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 12613 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 10837 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 10896 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 10897 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 10956 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | || || |||| |||||| || Sbjct 10957 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGT 11016 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 11017 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 11065 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 11124 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 11125 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 11184 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | || || |||| |||||| || Sbjct 11185 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGT 11244 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 11245 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 11293 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 11352 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 11353 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 11412 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | || || |||| |||||| || Sbjct 11413 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGT 11472 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 11473 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 11521 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 11580 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 11581 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 11640 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | || || |||| |||||| || Sbjct 11641 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGT 11700 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 11701 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 11749 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 11808 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 11809 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 11868 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | || || |||| |||||| || Sbjct 11869 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGT 11928 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 11929 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 11977 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 12036 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 12037 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 12096 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | || || |||| |||||| || Sbjct 12097 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGT 12156 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 12157 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 12205 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 12264 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 12265 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 12324 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | || || |||| |||||| || Sbjct 12325 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACGTCCAGCGTGATGGT 12384 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || || || ||||| Sbjct 12385 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 Score = 118 bits (130), Expect = 1e-21 Identities = 142/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || | | || || | || Sbjct 12661 CAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGGCCATC 12720 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| ||||| || || | ||||||||||| | || | || ||||||||| Sbjct 12721 CTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 12780 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||||||| | | | ||||||||| | ||||| |||| |||||| || Sbjct 12781 CTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCCAGCGTGATGGT 12840 Query 35704 TTTACCC-GTCA 35714 || ||| |||| Sbjct 12841 CTTGCCCTGTCA 12852 >seq159 Length=12779 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | || || |||| ||||||||||| |||||||| Sbjct 10510 CTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAA 10569 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | || | | ||||||||| |||||||||||||| | | Sbjct 10570 GATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATT 10629 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || || || | ||||| || || ||||||| || || || Sbjct 10630 CTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 10689 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 10690 GAAGATCTGCAT 10701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450760630083080