Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq5733 749 0.0 seq225 544 9e-150 >seq5733 Length=57551 Score = 749 bits (830), Expect = 0.0 Identities = 743/955 (78%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 159987 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 160046 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 160047 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 160106 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 160107 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 160166 || || ||||| ||||| | || || |||||||| ||| | ||||||||| |||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 160167 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 160226 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 160227 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCAT--CTATG 160284 || || ||||||||||||| |||||| |||||||| |||||| | | || | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 160285 CATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 160344 | || ||||||||||| ||||||||| ||||||||||| ||||| || ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 160345 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTC 160404 |||| | || |||||||| |||||||||||||| |||||| | || || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 160405 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 160464 ||||| ||||| |||| ||||||| | ||||| ||||||||||| |||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 160465 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGG 160524 ||||||||||||||||||| || |||||||| || ||||| ||| || |||||||| | Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 160525 TATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC 160584 | || ||||||||||| ||| |||||||||||| ||| || || || | | | Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 160585 GTGAAACGACTGAA-ACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAGGAAG 160641 ||||||| |||| || | || | | ||||||||||| || ||||| ||||| |||| Sbjct 41231 GTGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 41175 Query 160642 AGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCAT 160701 | || ||||||||||| || || || |||||||| || ||||| ||||||||||| || Sbjct 41174 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 41115 Query 160702 CATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCT 160761 ||||||||||| ||| | | ||||||||| | || |||||||| || || || |||| Sbjct 41114 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCT 41055 Query 160762 GGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACC 160821 |||| ||||||||||||||||| || |||||||| ||| | ||||||||||||||||||| Sbjct 41054 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACC 40995 Query 160822 AGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTG 160881 | || | | ||| ||||||||||||| | ||||| ||||| ||| | | || |||| Sbjct 40994 AATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 40935 Query 160882 CTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 160936 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 40934 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 544 bits (602), Expect = 9e-150 Identities = 739/1024 (72%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 37823 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGC 37882 Query 161748 CTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTT 161806 ||| || || ||||| || || | |||||| |||| || ||| | || || || ||||| Sbjct 37883 CTT-TTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 37941 Query 161807 CGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCT 161866 | || |||||||| ||||| | || ||| ||| | || || ||||| | Sbjct 37942 TGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTT 38001 Query 161867 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGG 161926 || | |||| || ||||| || ||||||||| || | || | | ||||| Sbjct 38002 AACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGG 38061 Query 161927 TCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 161986 ||||| || ||||| |||||| || ||| | ||| |||| ||| | ||| |||| | Sbjct 38062 ACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTAT 38121 Query 161987 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 162046 ||||| || ||||| || | ||||||||||| | ||||| || || | || || Sbjct 38122 AGCACTACACGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCG 38181 Query 162047 TCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 162106 |||| | ||||| ||||| ||||| || ||||| |||||||| |||||||| || ||||| Sbjct 38182 TCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGT 38241 Query 162107 CAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 162166 || ||| | || || || | || || | |||||||| |||||||| ||||| Sbjct 38242 TTCTGTATTCTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGG 38301 Query 162167 GGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAA 162226 ||| ||||| || || |||| | || || | ||||| |||||||||||||| || || Sbjct 38302 GGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAA 38361 Query 162227 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCA 162286 || |||||||||||||| || || || || |||| || ||| | ||||||| ||||| Sbjct 38362 TCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCA 38421 Query 162287 CGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGC 162346 |||| |||||| ||||||||| ||| || ||||| || |||||||| || || Sbjct 38422 TGGAGCCACAGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGC 38481 Query 162347 GTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 162406 |||| | ||||| ||||| |||||||| ||||| || || || | |||||||| Sbjct 38482 GTTTACACCAACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTC 38541 Query 162407 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 162466 || || || ||| | || || || ||||| || ||||||||||| |||||||| ||||| Sbjct 38542 TCAAATTTTTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGT 38601 Query 162467 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCG 162526 ||||| | ||| |||||||| ||| |||| ||| ||||| | || | || | | Sbjct 38602 TCCTGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAG 38661 Query 162527 TGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTT 162586 || ||||||||||| ||| ||| | | || || |||||||| || |||||||| || Sbjct 38662 AGCATACGATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTT 38721 Query 162587 CTACACTAAGAACATTCTGCTCAATGAAGG-ACTA---CGTGCATGGTTAGCACCTGCCG 162642 ||||||||| || || | | |||||||| | || |||| |||| | |||| | Sbjct 38722 CTACACTAAAAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCAC---AAG 38777 Query 162643 ACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTT 162702 ||||||| ||||| || ||| | |||||||| || ||| | || | || |||||||||| Sbjct 38778 ACCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTT 38837 Query 162703 AATA 162706 |||| Sbjct 38838 AATA 38841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559463079276200