Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq5733 728 0.0 seq225 425 7e-114 >seq5733 Length=57551 Score = 728 bits (806), Expect = 0.0 Identities = 739/957 (77%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 181008 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 181067 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 181068 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 181127 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 181128 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 181187 || || ||||| ||||| | || || |||||||| ||| | ||||||||| |||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 181188 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 181247 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 181248 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTA---T 181304 || || ||||||||||||| |||||| ||||| || |||||| | | || | || | Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTAGCTT 41532 Query 181305 GCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGT 181364 || ||||||||||||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct 41531 GC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 41473 Query 181365 GTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGT 181424 || || | ||| |||||||| || ||||||||||| |||||| |||| || || | || Sbjct 41472 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGA 41413 Query 181425 CAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTT 181484 |||||| |||||||| | ||||| | || || |||||||| ||||||| |||| | Sbjct 41412 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTA 41353 Query 181485 GTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 181544 || ||||||||||| ||||||||||| ||||| || ||||| ||| ||||| || ||| Sbjct 41352 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 41293 Query 181545 GTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 181604 || |||||||| || | |||||||| |||||||||||| | || |||||| | || Sbjct 41292 GTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATC 41233 Query 181605 CGTGAGACGACTGAA-ACTGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAA 181661 ||||| || |||| || | || | | ||||| |||||||| ||||||||||||||| Sbjct 41232 CGTGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAA 41176 Query 181662 GAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCT 181721 || || ||||||||||| || || |||||||||||||| || || ||||||||||| || Sbjct 41175 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCG 41116 Query 181722 TCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATC 181781 ||||||||||||||| | | ||||||||| | || |||||||| || || || ||| Sbjct 41115 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATC 41056 Query 181782 TGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAAC 181841 ||||| || || || || || || || |||||||||||| | || || |||||||||||| Sbjct 41055 TGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAAC 40996 Query 181842 CAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGT 181901 || || | | || | ||||| ||||| ||||||| ||||| ||| | |||||||| Sbjct 40995 CAATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 40936 Query 181902 GCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGAT 181958 || | | | || |||||||| |||||||| || ||||||||||||||||| || ||| Sbjct 40935 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 40879 >seq225 Length=49998 Score = 425 bits (470), Expect = 7e-114 Identities = 699/1003 (70%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 182373 GACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 182432 || |||||| | ||||| ||||| || || ||| | |||||||| || || || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTATT 37893 Query 182433 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTG 182491 |||| | || | |||||| |||| || ||| | || || || |||||||||| ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 182492 GTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGT 182551 ||| || || || | || ||||| ||| | ||||| |||||| | || | ||| || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 182552 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 182611 || || || || | ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 182612 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 182671 || ||||| || ||| ||| |||| ||| | ||| ||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 182672 TGCCTTCGCTCTCATTGGTTTCATGCTTAGG-CAATTTGAACTTGCTCGCCTGATTGGAA 182730 ||| || | | | ||||| ||| || ||| | ||||| || | ||||| || | || | Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 182731 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCC 182790 | | || ||||| || ||||| || ||||| |||||||| ||||| || ||| ||| Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 182791 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 182850 | || |||||| | ||||| | |||||| ||||| || ||||| || || || | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 182851 TCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATA 182910 | ||| | || | || ||| | || |||||||| ||||||||||| || || ||||||| Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 182911 TGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAG 182970 ||||||| || || || || | || || ||| | | ||| || ||||| | ||||| Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 182971 TAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCA 183030 |||| ||||| | | ||||||||| || ||||||||||| ||||| | | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 38492 Query 183031 CTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCG 183090 | || || || || ||||||||||| ||||||||| | || ||||| ||||| || | Sbjct 38493 CACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTG 38552 Query 183091 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183150 | || || || || || |||||| | || ||||| ||||| ||||||||||| | | Sbjct 38553 GTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAG 38612 Query 183151 GTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATT 183210 || | ||| |||| |||| || |||| | || | ||| | | || || |||| Sbjct 38613 GTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATT 38672 Query 183211 TTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGA 183270 | || ||||||| || | || || |||||||| || || || || |||||||| || | Sbjct 38673 TCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 38732 Query 183271 ACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAA 183330 | ||| | | |||||||| | | | ||| |||| | || ||||||||||||| Sbjct 38733 ATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAA 38792 Query 183331 ACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 | || | ||||| || || ||| |||| | || ||||| || Sbjct 38793 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 179464 TGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTAC 179523 ||||| ||||| | || || | ||||||||||||||| || | || | ||| Sbjct 18860 TGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAACTACCTTAT 18919 Query 179524 TCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGAT 179583 ||||| | | ||| |||||||| |||||||||| | | | |||| || ||||| Sbjct 18920 TCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTACTATTGAT 18979 Query 179584 CAAAGCGATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGC 179643 ||| || ||||| ||||| || || |||||| | | |||||| | | |||||| Sbjct 18980 CAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTATTAACTTGC 19039 Query 179644 GTATCTTATCCTACTAGTGATTG 179666 ||| | |||||| | |||||| Sbjct 19040 GTAGCATATCCTGCATCTGATTG 19062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614572648405280