Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq5733 731 0.0 seq225 459 4e-124 >seq5733 Length=57551 Score = 731 bits (810), Expect = 0.0 Identities = 763/996 (77%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 ||||| | || || || ||| |||| || | || ||| | ||| ||||||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578 |||||| ||||||| || ||||| ||| | || || || ||||| ||||||||| | Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638 | || || ||||| || ||||| || |||||||||||||| ||||| ||||| | || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698 ||||||||||| ||| | ||||||||| |||||||||| ||||| || ||| | |||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758 |||||| | |||||||| || | | ||||| ||||| |||||||||||||||| |||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 174759 CTAGTTGTCTTCCACTTCCTTATT-GGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 || || || || |||||| ||||| ||| | ||| ||||||||||| |||||||| Sbjct 41565 CTTGTAGTATTACACTTC-TTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACT 41507 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 || |||||||| ||| | |||||||| | ||||| | ||| || ||||| || || Sbjct 41506 TAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGC 41447 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 ||| || ||||||||| |||| || || | || |||||| ||||| || | ||||| Sbjct 41446 AGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCC 41387 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || ||||| ||||| || ||||||| |||||| || |||||||||||||| ||||| | Sbjct 41386 TTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCT 41327 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGC 175057 |||||||| ||||| ||| || || || ||||| || ||||| || || ||| || Sbjct 41326 TATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGC 41267 Query 175058 GATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAA-ACTGAGTCAC 175116 ||||| ||||| ||||| || ||| | ||||||| ||||||| || | || | Sbjct 41266 TATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGCGTATC 41210 Query 175117 AG--AACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCA 175174 | ||||| |||||||| ||||| ||||||||||| || || |||||||| || || || Sbjct 41209 TGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 41150 Query 175175 TGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCA 175234 || ||||| || ||||| |||||||||||||| |||||||||||||| | | || Sbjct 41149 CGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACA 41090 Query 175235 CTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCAC 175294 |||||||||||| |||||||||||||| ||||||||||| || || ||||||||| || Sbjct 41089 CTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTAC 41030 Query 175295 AATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAG 175354 |||||||| ||| | || ||||||||||||||||| || ||| | || | |||||| | Sbjct 41029 TATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCG 40970 Query 175355 AGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCA 175414 || | ||||| ||||| || || | ||| | |||| | | || |||||||||||||| Sbjct 40969 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 40910 Query 175415 TGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 || | || || ||||||||||| |||||||| || Sbjct 40909 CGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 40874 >seq225 Length=49998 Score = 459 bits (508), Expect = 4e-124 Identities = 700/988 (71%), Gaps = 12/988 (1%) Strand=Plus/Plus Query 175879 GAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTTCCCA-CTGCTTATCTT 175937 ||||| | || | |||||||| ||||| || | || || |||||| | || | |||| Sbjct 37851 GAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTATTCCCAACCGCATTTCTT 37909 Query 175938 GCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTT 175997 || |||| || ||| | || || || |||||||| || |||||| || ||||| | Sbjct 37910 GCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTGGTATACTCATGGATTA 37969 Query 175998 GCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGAT 176057 || ||||| ||| | || || |||||| | || | || || || || || || | Sbjct 37970 GCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGTATCAACACCAGCAAAC 38029 Query 176058 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGG 176117 ||||||||| || | || || | ||||| |||||| | || || || ||| || Sbjct 38030 AGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCAAGGAGATTTCACTCGT 38089 Query 176118 TGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATT 176177 ||||| ||| |||| || | ||| | ||| | || || |||||||| || | | | ||| Sbjct 38090 TGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGGTGCATTTGGTTTAATT 38149 Query 176178 GGATTCATGCTT-CGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGC 176236 |||||| || || ||||| || || | || | || | ||||| ||||| |||||||| Sbjct 38150 GGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTATTCGTCCATACAACGC 38208 Query 176237 TATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGG 176296 ||||||||| ||| ||||| || |||||||| ||| || | | || || ||||| Sbjct 38209 AATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCTTAATTTATCCTCTAGG 38268 Query 176297 TCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATT 176356 ||| | |||||||| || || ||||| || ||||| || || |||| |||| Sbjct 38269 ACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGATTTTTATT 38328 Query 176357 GTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGG 176416 || | || |||||||| ||||||||||| || || |||||||||||||| || || || Sbjct 38329 ATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATATGATGGGTGTAGCAGG 38388 Query 176417 TATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATA 176476 || |||| || ||| || |||||||||| ||||| | || || |||||||| |||| Sbjct 38389 GATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAGTAGAAAATACACTATT 38448 Query 176477 TGAAGATGGAGA-ACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGA 176535 ||||||||| || | | | ||||| ||| |||||| | || || ||||| | Sbjct 38449 TGAAGATGGTGATGCTGCA-AACACATTCCGTGCGTTTACACCAACACAATCAGAAGAAA 38507 Query 176536 CCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTA 176595 | ||||||||||| || ||||| | |||||||| ||||| || || || || || | Sbjct 38508 CTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGGTGTAGCTTTCTCGA 38567 Query 176596 ATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAA 176655 | || ||||||||||| ||||| ||||| ||||| ||||| | ||| | ||| ||| Sbjct 38568 ACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGGTTTATGG---ACAA 38624 Query 176656 G---TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAG 176712 | | |||| || |||| | || | ||| | | || || ||||| || |||| Sbjct 38625 GTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTTCGTATCTCAAG 38684 Query 176713 AGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTA 176772 || || | || || |||||||| || ||||||||||||||||| || || ||| | | | Sbjct 38685 AGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATATCTTATTAA 38744 Query 176773 ACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCC 176832 | ||||| | ||| | |||||||| | || ||||||||||| |||||||||| Sbjct 38745 ATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAATTTTGTATTCC 38804 Query 176833 CAGAAGAAGTTCTACCTAGAGGTAACGC 176860 |||| || ||| |||| | || ||||| Sbjct 38805 CAGAGGAGGTTTTACCACGTGGAAACGC 38832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729876214773880