Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq5733 735 0.0 seq225 455 4e-123 >seq5733 Length=57551 Score = 735 bits (814), Expect = 0.0 Identities = 771/1004 (77%), Gaps = 12/1004 (1%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 177936 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 177995 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 177996 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 178055 || || ||||| ||||| | || || |||||||| ||| | ||||||||| |||| | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 178056 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 178115 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 178116 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATG 178173 || || ||||||||||||| |||||| |||||||| |||||| | | ||| | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 178174 CATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 178233 | |||||||||||||| ||||||||| ||||||||||| ||||| || ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 178234 TAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTC 178293 |||| | ||| ||||||||||| |||||||| ||||||||| | || || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 178294 AAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTG 178353 ||||| || ||||| | ||||| | || || |||||||| ||||||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 178354 TTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTG 178413 | ||||||||||||||||||||||| |||||||| ||||| ||| ||||| || |||| Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 178414 TATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTC 178473 | || ||||| || | |||||||| |||||||||||| | || |||||| | | | Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 178474 GTGAAACGACTGAA-AC--AGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG 178530 ||||| |||||| || | ||| ||||| ||||| || |||||||||||||||| Sbjct 41231 GTGAA---ACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 41175 Query 178531 AGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTT 178590 | || ||||||||||| || ||||| || ||||| || ||||| ||||||||||| || Sbjct 41174 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 41115 Query 178591 CATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCT 178650 ||||||||||||||| | | ||||||||| | || |||||||| || || || |||| Sbjct 41114 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCT 41055 Query 178651 GGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACC 178710 |||| || || || || || || || |||||||||||| | || || ||||||||||||| Sbjct 41054 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACC 40995 Query 178711 AGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTG 178770 | || | | || | ||||| ||||| ||||||| ||||| ||| | ||||||||| Sbjct 40994 AATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 40935 Query 178771 CCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTG 178830 | | | | || |||||||| |||||||| || ||||||||||||||||| || ||| | | Sbjct 40934 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAG 40875 Query 178831 CAGCAGCTGA-GTCCACACCTGTGGCCTTAATTGCTCCTTCTGT 178873 | | | || | || | || || || |||| |||||| |||| Sbjct 40874 CCGTATCTAATGTTC-TTCCAGTTGCATTAAACGCTCCTGCTGT 40832 >seq225 Length=49998 Score = 455 bits (504), Expect = 4e-123 Identities = 709/1004 (71%), Gaps = 12/1004 (1%) Strand=Plus/Plus Query 179235 GACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179294 || |||||| | ||||| ||||| || || ||| | |||||||| || || || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTATT 37893 Query 179295 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTG 179353 |||| | || | |||||| |||| || ||| | || || || |||||||||| ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 179354 GTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTGT 179413 ||| || || || | || ||| ||| | || || |||||| | || | ||| || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 179414 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 179473 || || || || | ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 179474 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 179533 || ||||| || ||| ||| |||| ||| | ||| ||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 179534 TGCCTTCGCTCTCATTGGTTTCATGCTTAGG-CAATTTGAACTTGCTCGCCTGATTGGTA 179592 ||| || | | | ||||| ||| || ||| | ||||| || | ||||| || | |||| Sbjct 38134 TGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 38192 Query 179593 TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCC 179652 | | || ||||| || ||||| || ||||| |||||||| ||||| || ||| ||| Sbjct 38193 TTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCT 38252 Query 179653 TCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGA 179712 | || |||||| | ||||| | |||||| ||||| || ||||| || || || | Sbjct 38253 TAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 38312 Query 179713 TCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATA 179772 | ||| | || || | ||| | || |||||||| |||||||| || || || ||||||| Sbjct 38313 TTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATA 38372 Query 179773 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTG 179832 ||||||| || || || || ||||||| ||| | | ||| || ||||||| || | Sbjct 38373 TGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAG 38432 Query 179833 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGA 179892 |||| |||||| | | ||||||||| || ||||| || || |||||| | | Sbjct 38433 TAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 38492 Query 179893 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 179952 |||| |||||| |||||||| ||||| || || || | |||||||| || || || | Sbjct 38493 CACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTG 38552 Query 179953 GTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 180012 || | || || || ||||| || ||||||||||| |||||||| ||||| ||||| | | Sbjct 38553 GTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAG 38612 Query 180013 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 180072 || |||||||| ||| |||| ||| ||||| | || | || | | || ||||||| Sbjct 38613 GTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATT 38672 Query 180073 TCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGA 180132 ||||| ||| ||| | | || || |||||||| || ||||| || |||||||| || | Sbjct 38673 TCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 38732 Query 180133 ACATTCTTCTCAATGAAGG-ACTA---CGTGCATGGTTGGCACCAGTTGATCAACCACAT 180188 | || | | |||||||| | || |||| |||| | |||| | || ||||||||| Sbjct 38733 ATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCACAA---GACCAACCACAT 38788 Query 180189 GAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 || || ||||||||||| || ||| | ||| | || || || Sbjct 38789 GAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 38832 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 176331 TGTGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTAC 176390 ||||| ||||| | || || | ||||||||||||||| || | || | ||| Sbjct 18860 TGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAACTACCTTAT 18919 Query 176391 TCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGAT 176450 ||||| | | ||| |||||||| ||||||||||| | | | ||||| || ||||| Sbjct 18920 TCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTACTATTGAT 18979 Query 176451 CAGAGTGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGC 176510 || ||| || || || | || ||||||||| ||| | || || | | |||||| Sbjct 18980 CAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTATTAACTTGC 19039 Query 176511 GTATCTTATCCTACTAGTGATTG 176533 ||| | |||||| | |||||| Sbjct 19040 GTAGCATATCCTGCATCTGATTG 19062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605965277972880