Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq5733 740 0.0 seq225 535 5e-147 >seq5733 Length=57551 Score = 740 bits (820), Expect = 0.0 Identities = 741/955 (78%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 158406 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 158465 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 41829 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 41770 Query 158466 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 158525 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 41769 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 41710 Query 158526 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 158585 || || ||||| ||||| | || || |||||||| ||| | ||||||||| | || | Sbjct 41709 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGT 41650 Query 158586 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 158645 || ||||| |||||| |||||||||| || | |||||||| || || | || |||||| Sbjct 41649 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGG 41590 Query 158646 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 158703 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 41589 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 41531 Query 158704 CATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTG 158763 | || ||||||||||||||||||||| ||||| ||||| ||||| || ||||| | | Sbjct 41530 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 41472 Query 158764 TAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 158823 |||| | || || ||||| |||||||||||||| |||||| | || || || | || | Sbjct 41471 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGAC 41412 Query 158824 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158883 ||||| ||||| |||| ||||||| | ||||| ||||||||||| |||| |||| | | Sbjct 41411 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 41352 Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158943 |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | Sbjct 41351 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 41292 Query 158944 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC 159003 | || ||||||||| | ||| ||||||||| || ||| || || || | | | Sbjct 41291 TGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 41232 Query 159004 GTGAAACGACTGAA-ACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAG 159060 ||||||| |||| || | || | | ||||| |||||||| |||||||||||||||| Sbjct 41231 GTGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAG 41175 Query 159061 AAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTT 159120 |||| || || ||||| || || || |||||||| || ||||| |||||||||||||| Sbjct 41174 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGA 41115 Query 159121 CATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 159180 ||||||||||| ||| | || ||||||||| | ||||||||||| ||||| || |||| Sbjct 41114 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCT 41055 Query 159181 GGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACC 159240 |||| || || ||||| || || |||||||| ||| | ||||||||||||||||||| Sbjct 41054 GGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACC 40995 Query 159241 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTG 159300 | || | ||||| |||| ||||||||| | ||||| ||||| || | | ||||||| Sbjct 40994 AATCAGTTGTTGATAGTCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 40935 Query 159301 CAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 159355 | | | | ||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 40934 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 535 bits (592), Expect = 5e-147 Identities = 737/1024 (72%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 37823 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGC 37882 Query 159959 CTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTT 160017 ||| || || ||||| || || | |||||| |||| || ||| | || || || ||||| Sbjct 37883 CTT-TTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 37941 Query 160018 CGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCT 160077 | || |||||||| |||||| | || ||| ||| | || || ||||| | Sbjct 37942 TGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTT 38001 Query 160078 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGG 160137 || | |||| || ||||| || ||||||||| || | || | | ||||| Sbjct 38002 AACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGG 38061 Query 160138 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGT 160197 ||||| || ||||| |||||| | ||| | ||| |||| ||| | ||| |||| | Sbjct 38062 ACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTAT 38121 Query 160198 GGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG 160257 ||||| || ||||| || | ||||||||||| | ||||| || || | || || Sbjct 38122 AGCACTACACGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCG 38181 Query 160258 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGT 160317 ||| | ||||| ||||| ||||| || ||||| |||||||| |||||||| || ||||| Sbjct 38182 TCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGT 38241 Query 160318 CAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGG 160377 |||||| | || || || | || || | |||||||| |||||||| ||||| Sbjct 38242 TTCTGTATTCTTAATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGG 38301 Query 160378 GGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAA 160437 ||| ||||| || || |||| | || ||| | ||||| || || |||||||| ||||| Sbjct 38302 GGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAA 38361 Query 160438 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCA 160497 || |||||||||||||| || || || || ||||||| ||| | | ||| || || Sbjct 38362 TCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCA 38421 Query 160498 TGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGC 160557 ||| | || ||||| || ||||| | ||||||||| || ||||| || || || Sbjct 38422 TGGAGCCACAGTAGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGC 38481 Query 160558 GTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 160617 |||| | ||||| |||||| |||||||| ||||| || || || | |||||||| Sbjct 38482 GTTTACACCAACACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTC 38541 Query 160618 GCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160677 || || || ||| | || || || ||||| || ||||||||||| |||||||| ||||| Sbjct 38542 TCAAATTTTTGGTGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGT 38601 Query 160678 GCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCG 160737 ||||| | ||| | |||||| | |||| ||| ||||| | || | ||| | | Sbjct 38602 TCCTGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAG 38661 Query 160738 TGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTT 160797 || ||||||||||| ||||||| || | || || ||||||||||||||||| || || Sbjct 38662 AGCATACGATTTCGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTT 38721 Query 160798 CTACACCAAGAACATCCTACTGAATGAAGG-ACTA---CGTGCATGGTTAGCACCTGCCG 160853 |||||| || || ||| || | |||||||| | || |||| |||| | |||| | Sbjct 38722 CTACACTAAAAATATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCAC---AAG 38777 Query 160854 ACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTT 160913 ||||||| ||||| || ||| | |||||||| || ||| | || | || |||||||||| Sbjct 38778 ACCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTT 38837 Query 160914 AATA 160917 |||| Sbjct 38838 AATA 38841 Score = 86.0 bits (94), Expect = 7e-12 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 159531 TGTGAAGCGGACCAATACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTAT 159590 ||||| | ||| |||||||||||||||||||||| ||| || | || || ||| Sbjct 18860 TGTGATGATGACGAATACATTTTAGACGCTGCTGAAGAAAATGGATTTGAACTACCTTAT 18919 Query 159591 TCATGTCGTGCTGGTGCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGAC 159650 || || | | ||| ||||| || |||||||| ||| | || || |||| Sbjct 18920 TCTTGCAGATCAGGTTCTTGTTCAACTTGTGCTGGCCGAGTTGTTGGTGGTACTATTGAT 18979 Query 159651 CAAAGTGACCAATCTTTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGT 159710 ||| ||| ||||| || || || ||||||||| | || || ||||| | | ||||| Sbjct 18980 CAATCTGAGCAATCCTTTTTAGAAGATGATCAAGTTGCAGAGGGATTCGTATTAACTTGC 19039 Query 159711 GTCTCCTACCCTACATCAGA-CGTAACTATCTTAACCGAACAGGAGGAGTCACTTTATTA 159769 || | || ||| |||| || || | || ||||| | || ||||| ||||||||| Sbjct 19040 GTAGCATATCCTGCATCTGATTGTCA-AATTTTAACAAATCAAGAGGATGAACTTTATTA 19098 Query 159770 A 159770 | Sbjct 19099 A 19099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552433193462080