Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq5733 747 0.0 seq225 497 1e-135 >seq5733 Length=57551 Score = 747 bits (828), Expect = 0.0 Identities = 763/990 (77%), Gaps = 8/990 (1%) Strand=Plus/Minus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 ||||| | |||||| ||| | || ||| | || ||||| || | ||||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTA 178971 ||||| | ||||| || || || | | || || | ||| |||||| | |||||| | Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 178972 GCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179031 ||||||||||| || ||||| || || ||||||||||| || ||||| ||||| | || Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 179032 GGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTC 179091 ||||||||||| ||| | ||||| ||| | || ||||| ||||| |||||| | |||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 179092 TACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAA 179151 ||||| | |||||||| || || | || |||||||| || ||||||||||||| |||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 179152 CTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTT 179211 || ||||| || |||||| | | || | | ||| ||||||||||| ||||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 41506 Query 179212 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCT 179271 |||||| |||| |||||||| ||||| | || || | ||| || ||||| ||||| Sbjct 41505 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 41446 Query 179272 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCT 179331 || |||||||||| | || || || | || |||||| |||||||||| ||||||| Sbjct 41445 GCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCT 41386 Query 179332 CTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTT 179391 | ||||| ||||||||||| |||| |||| | ||||||||||||||||||||||| ||| Sbjct 41385 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 41326 Query 179392 ATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCT 179451 |||||||| ||||||||| ||||||||||| || || ||||||||| | ||| |||| Sbjct 41325 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCT 41266 Query 179452 ATGCACGGAAGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTG-AGACAGAGTCAC 179509 |||||||| ||| || || | || | || | ||||| ||||| |||| | || | Sbjct 41265 ATGCACGGTTCTCTTGTAACAT-CTAGTTTAATCCGTGA---AACTGAAGACGGCGTATC 41210 Query 179510 AG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACA 179567 | ||||| ||||| || ||||||||||||||||| || || |||||||| || ||||| Sbjct 41209 TGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACA 41150 Query 179568 TGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCA 179627 || ||||| || ||||| ||||||||||| || || ||||||||||| |||| || Sbjct 41149 CGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACA 41090 Query 179628 CTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAAC 179687 ||||||| | ||||| ||||| ||||| || |||||||| ||||||||||| || || Sbjct 41089 CTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTAC 41030 Query 179688 CATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACG 179747 ||||| || ||| | |||||||||||||||||||| || | |||| ||||||| || Sbjct 41029 TATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCG 40970 Query 179748 TGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 179807 ||| | ||||| ||||| ||| | | |||||||| | ||| ||||||||||| ||||| Sbjct 40969 TGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCA 40910 Query 179808 TGAGCGTAACGCACACAACTTCCCACTCGA 179837 || |||||||| ||||||||||| || || Sbjct 40909 CGAACGTAACGCGCACAACTTCCCTCTAGA 40880 >seq225 Length=49998 Score = 497 bits (550), Expect = 1e-135 Identities = 716/1003 (71%), Gaps = 10/1003 (1%) Strand=Plus/Plus Query 180033 GACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTT 180092 || |||||| | ||||| || || || || ||| | || ||||| || || || || || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTA-TTATT 37893 Query 180093 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTG 180151 |||| | || | |||||| |||| || ||| | || || || ||||||| || ||| Sbjct 37894 CCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 37953 Query 180152 GTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGT 180211 ||| || || || | || ||||| ||| | ||||| |||||| | || | ||| || Sbjct 37954 GTATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGT 38013 Query 180212 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 180271 || || || || || ||||||||| || | || || | ||||| ||||| | || Sbjct 38014 ATCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCA 38073 Query 180272 GGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGG 180331 || ||||| || ||| ||| |||| ||| | ||| ||| | || || ||||| Sbjct 38074 AGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGG 38133 Query 180332 TGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTAT 180391 ||| || | |||||||||| |||| || || || | || |||||| | ||||| Sbjct 38134 TGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTAT 38193 Query 180392 CCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCT 180451 ||||| ||||| || |||||||||||||| ||||| || |||||||| ||||| | Sbjct 38194 TCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCTT 38253 Query 180452 CATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAAT 180511 || || || || || || | ||||||||||| ||||| ||||||||| ||||| || Sbjct 38254 AATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTAT 38313 Query 180512 CTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 180571 || |||| || | || | || |||||||| |||||||| || || || |||||||| Sbjct 38314 TTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATAT 38373 Query 180572 GATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGT 180631 |||||| || || || || |||| || ||||| |||| ||||| ||||| | || || Sbjct 38374 GATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAGT 38433 Query 180632 GGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAAC 180691 || || ||||| | ||||||||| || |||||||| || || ||| |||| Sbjct 38434 AGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAAC 38493 Query 180692 GCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 180751 ||| || |||||||| || ||||| || || || | |||||||| || || || || Sbjct 38494 ACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGG 38553 Query 180752 TATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 180811 | | || || || ||||| || ||||||||||| |||||||| ||||| ||||| | || Sbjct 38554 TGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGG 38613 Query 180812 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 180871 | |||||||| ||| |||| ||| ||||| | || | || | | || |||||||| Sbjct 38614 TTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTT 38673 Query 180872 CGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAA 180931 ||| ||||||| | | || || |||||||| || || || || |||||||| || || Sbjct 38674 CGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAA 38733 Query 180932 CATCCTATTGAATGAAGG-ACTA---CGTGCATGGTTGGCACCTGCCGATCAACCACACG 180987 ||| |||| |||||||| | || |||| |||| | |||| || |||||||| | Sbjct 38734 TATCTTATTAAATGAAGGTATTAGATCGTGGATGGCT-GCAC---AAGACCAACCACATG 38789 Query 180988 AAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||| || | ||||| || || ||| ||||| | || ||||| Sbjct 38790 AAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 38832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610284962018880