Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4035 168 9e-37 seq3524 104 3e-17 >seq4035 Length=10978 Score = 168 bits (186), Expect = 9e-37 Identities = 591/911 (65%), Gaps = 14/911 (2%) Strand=Plus/Plus Query 69286 TTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTA 69345 ||||| || || ||||| | | | | ||| || || ||||| || || | || | | Sbjct 7204 TTACACACAGCCACCTCCTCGGGGCTCGTATACTGGATAATCTCCGTGCACAAGTT-CGA 7262 Query 69346 CATTTGA-TAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404 || || | ||||| | |||||||||||| ||||| ||||| ||||| ||| | || Sbjct 7263 GCTTCGAATCGTCCCTAAATTTTGCTGATTGCTCTTAAGATTACACGCGTCTTTGAAGAG 7322 Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464 ||| | || || || ||||| ||||| || || | || | ||| | | | || Sbjct 7323 CATATAAGGCGTGCCCGTTTCGATCTGTGAGTCCAGGATGGCGAACCACAGGTCTTGCGC 7382 Query 69465 ATTTATTACGGTCTTGTAACGCTTCTC---TTTTTCATATTGTGTATATAGCCGTTCGAA 69521 | | | ||||| | ||| | |||||| ||||| ||| || || || Sbjct 7383 ACGCACT---GTCTTTTTTACTTTCCCAGCTTTTTCGTATTGCAGATACAGGACCTCAAA 7439 Query 69522 TTCATCTCCCCAAACA-TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580 || | | || ||| || |||| |||||||| | || |||||||||| |||||| | Sbjct 7440 CTCTT-TGCCATGACAGTCGCCCAAGCCAGGACACTGATCAGGACACATCAGTGACCAAA 7498 Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640 |||| |||| |||| |||||||| | ||||||||||||||| | |||||| | Sbjct 7499 TCCCATCTTCCTCCACTCTCTTCATAAACAAATCGGGAATCCAAAGCCCGTAAAAGAGGT 7558 Query 69641 CTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAGAAACTCCATAATA 69699 | | | | |||||| || || || | || ||||| || || | ||| | ||| Sbjct 7559 CGCGCGCCCGGGCTTCTTCCTTCCCATGGTTCTTCCTTAAG-TCAAGCACCTCGAAGATA 7617 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 || | |||||| || || | || || || | |||||||||| || ||| |||||| Sbjct 7618 TCCGCATGCCAAGGCTCAATGTAAATAGCAAATGCTCCCGGTCGCTTCCCTCCCCCCTGA 7677 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | || | ||||| | | | || | |||||| || | | |||||| | Sbjct 7678 TCGACATACCGAGCAGTCACGTCAAACACACGCAGCATGGGCACCAAGCCATTACTCGTT 7737 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 || || ||||| || || ||| |||||||| || | ||| | || || Sbjct 7738 CCCTTCGTTCCTTTGATGTACGCTCCGTGCGCGCGAATGTTGTGCACAGACAAGCCAATC 7797 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || || ||| ||| ||| | || || ||||||| |||||||| || ||| | || Sbjct 7798 CCACCCGCCGCCTTACTGATGACCGCGCACTGTTTCAAGGTGTCATAGATCCCCACAATC 7857 Query 69940 CTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGC 69998 ||| | |||| |||||| || ||||| |||||| || | || || || Sbjct 7858 GAATCCGCCTTCATAGTTAAG-AGGAAACATGAAGACATCTGGGGGAAACGCGTCCCGGC 7916 Query 69999 ATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTC 70058 | |||||| || || || |||||| | ||||| || | | | || | || || || Sbjct 7917 GTGAAATAAAGTGGGCGACGCGTGAATAAACCACTTATTACTCATCAATTCATACGTCTC 7976 Query 70059 AATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118 | || | |||| || |||||| || | ||| || ||||||||||||| ||| Sbjct 7977 GAGCGCCGCCTCTAAGTCATTTCCATGAATCCCCAGCGCCACGCGCATCAACATATACTG 8036 Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178 || || || ||| || || | ||||||||||| ||| |||| || || || Sbjct 8037 TGGGCGCTCCACCACCTTTTTCCCAAGCTTCAACAGGTAAGATCGCTCCATTGTCTTGAA 8096 Query 70179 CCCAAAATAGT 70189 ||||||||||| Sbjct 8097 CCCAAAATAGT 8107 >seq3524 Length=35516 Score = 104 bits (114), Expect = 3e-17 Identities = 457/721 (63%), Gaps = 2/721 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||| ||| | | ||||| ||||| || || || ||| ||||| || || || || || Sbjct 11347 ATACAGCTGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCA 11406 Query 69567 CATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAG 69626 | || ||||| | | || | || || || | ||| || ||||| || |||| || Sbjct 11407 GAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAG 11466 Query 69627 AGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGA 69685 || || || || || | || | | ||||| || || || ||||| | Sbjct 11467 GGCGTAGAACAAG-TCGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTGCGCAGATCCA 11525 Query 69686 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTT 69745 | ||||| | ||||| | ||||| || || || || || || | ||| || | Sbjct 11526 GGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCT 11585 Query 69746 TATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAA 69805 | || ||||| || | ||| | ||| |||| || |||| | |||||| || | | Sbjct 11586 TGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGA 11645 Query 69806 TACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAA 69865 | || || || | || |||| ||| || || | | || || || ||| | Sbjct 11646 TGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTATGGA 11705 Query 69866 TAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCAT 69925 | || | ||| || || ||||| | || ||||| ||||| | || | ||||||| Sbjct 11706 TCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAGAGTGTCAT 11765 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGAT 69985 | ||||| || ||| || || ||||| | ||||| || ||| || | || | Sbjct 11766 AGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCC 11825 Query 69986 GTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCA 70045 | || || || || || | |||||| | ||||||||||| || | || | | Sbjct 11826 GCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGA 11885 Query 70046 GATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCA 70105 ||||||| || ||||| || | || | ||| || ||| ||||| || || || |||| Sbjct 11886 GATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATGGCTACGCGCA 11945 Query 70106 TCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTT 70165 | | ||| ||||| ||||| || | | | || || | |||||| || || | Sbjct 11946 TGATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCATCTTGAGCAGGTAGGACTTCT 12005 Query 70166 CCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAAT 70225 |||| || || || || ||||||| || ||||||| || || ||||| | |||| Sbjct 12006 CCAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTCTCGATCATAGATAATTGCCGAAT 12065 Query 70226 T 70226 | Sbjct 12066 T 12066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686858561207640