Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2518 109 5e-19 seq35 107 2e-18 seq159 98.7 8e-16 >seq2518 Length=13831 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || |||| ||||| |||||||| | ||||| || || || || || ||||| Sbjct 5329 GCCACCACGCAGACGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGA 5270 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | ||| |||| || || || || || ||| | ||||| ||||| |||||||| || Sbjct 5269 CAGCGTACGCCCGTCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGG 5210 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| | |||| | | || | ||||| ||| || || Sbjct 5209 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 5150 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || |||||||| || || || ||||||||||| Sbjct 5149 ATCGAGGGTGATTGTCTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 5102 >seq35 Length=30318 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 11049 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 11108 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 11109 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 11168 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 11169 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTA 11228 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || || || ||||||||||| Sbjct 11229 CGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 11277 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 11336 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 11337 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 11396 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 11397 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTA 11456 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || || || ||||||||||| Sbjct 11457 CGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 11505 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 11564 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 11565 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 11624 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 11625 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTA 11684 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || || || ||||||||||| Sbjct 11685 CGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 11733 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 11792 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 11793 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 11852 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 11853 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTA 11912 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || || || ||||||||||| Sbjct 11913 CGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 11961 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 12020 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 12021 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 12080 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 12081 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTA 12140 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || || || ||||||||||| Sbjct 12141 CGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 12189 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 12248 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 12249 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 12308 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 12309 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTA 12368 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || || || ||||||||||| Sbjct 12369 CGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 12417 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 12476 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 12477 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 12536 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 12537 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCA 12596 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||||||| || || || ||||||||||| Sbjct 12597 CGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 10823 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 10882 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || || ||| | ||||| ||||| || || || || Sbjct 10883 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 10942 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| | |||| | | || | ||||| ||| || || Sbjct 10943 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11002 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||||||| || || || ||||||||||| Sbjct 11003 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 12645 TGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 12704 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||| || || ||| | ||||| ||||| || || || | Sbjct 12705 AAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGG 12764 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| ||| || | Sbjct 12765 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCA 12824 Query 27199 CTTCTAGAGTTATAGATTTGCCC-GTCAG 27226 | || || || || | |||||| ||||| Sbjct 12825 CGTCCAGCGTGATGGTCTTGCCCTGTCAG 12853 >seq159 Length=12779 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 27015 TTATTGCCTCCGC---GCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 || || ||||||| ||| |||| |||| || || || || || || ||||| ||| Sbjct 10466 TTCTTTCCTCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTG 10525 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 ||||| | |||| |||| || ||||| || || || | ||||| ||||| ||| Sbjct 10526 TAGTCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGA 10585 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTG 27191 || || || | || || || || |||||| | |||| | || | ||||| || Sbjct 10586 TCAGGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTG 10645 Query 27192 GCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | ||||| ||||| || || | ||||||||||| || || || ||||| ||||| ||| Sbjct 10646 GGCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGCT 10705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424904098326312