Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3524 93.3 1e-13 >seq3524 Length=35516 Score = 93.3 bits (102), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 256099 CTGGTCTTGGACCGAACTGCGCAACCAGATCGAGGAGCACGGACTGCGCAACTCGCAACG 256158 |||| |||| ||| |||||| | | || ||||||| || ||||||| || | | Sbjct 10705 CTGGGATTGGGCCGGCCTGCGCGTCAAAGTCCAGGAGCATGGCGTGCGCAATTCCCTGCT 10646 Query 256159 ATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTAACGTGGAAAGCATCGA 256218 ||||||||||||| |||||| ||| || ||||||||||| ||| || | | || Sbjct 10645 GCTGGCGCCCATGCCCACCGCCTCCACGGCCCAAATCCTGGGCAACAACGAGTCCGTGGA 10586 Query 256219 ACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAA 256278 ||| | || ||||| | | ||||||||||| | | ||||| || || | || || Sbjct 10585 GCCCTTCACGTCCAACATGTATTCGCGCCGCGTGCTGGCGGGCGAATTTACCATCGTCAA 10526 Query 256279 CCAGTACTTGGTGGACGACTTGGTACGA-CTCGGTCTGTGGAA 256320 | ||||| || | | |||| || | ||| | ||| || ||||| Sbjct 10525 CAAGTACCTGCTCGGCGACCTGAT-CGAGCGCGGCCTTTGGAA 10484 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| | || ||| | ||||| |||||| || ||| |||||||| || || || || Sbjct 11650 CGGCATCGTGCCCATGCTGCGTGTCTTCAACGACACGGCCCGCTACGTGGACCAGGGTGG 11591 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 ||||| ||| || | ||| |||||||||||||||| ||||||||||| || Sbjct 11590 GGGCAAGCGCAAGGGCTCTTTCGCCATCTACCTGGAGCCCTGGCACGCCGATAT 11537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588216928902695