Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3524 224 1e-53 seq225 109 7e-19 seq2878 86.0 8e-12 >seq3524 Length=35516 Score = 224 bits (248), Expect = 1e-53 Identities = 599/903 (66%), Gaps = 23/903 (3%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 || ||||| | || || || || | ||||||| ||| || |||| ||||| ||| Sbjct 11153 GTATACTCGATGATCTCCGTGCACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGG 11212 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| ||||| ||||||||| ||||||| |||||||| ||||||||| |||| Sbjct 11213 TTCGACTTGAGATTGCAGGCATCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGT 11272 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACA--ATGGCGTTG-GC-CCGTCC 111453 || | | | || |||| | || ||||| | || | ||| || || | | Sbjct 11273 GAGTCCAACACCGC-----AAACCACAGCTGCTGGGCCTTGATCACCTTGCGCGCCTTGC 11327 Query 111454 CTC-CGCCTCGTACTTTGTGTAGAGG-GCTTCAAACTCCTCACCCACCGCGTCGGAGAGA 111511 | | | ||||||| | || || |||| ||| ||||| || |||| | || Sbjct 11328 CACTCTTCTCGTACGTCTCATACAGCTGCTT-AAATTCCTCTCCACATACGTCCGCCAGG 11386 Query 111512 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571 || || || || || ||||| |||||||| | || | | ||| || |||| |||| Sbjct 11387 CCAGGGCACTCGTTGGGGCAGAACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATG 11446 Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631 || || || || |||| |||| | || | || | ||| || || | || Sbjct 11447 AACAGATCAGGCGTCCAGAGGGCGTAGAACAAGTCGCGGGCCCGCTCCAGCTCATTGCCG 11506 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||||| || | || |||||||| | |||||| |||||||| ||||| || |||| Sbjct 11507 TGGTTCTTGCGCAGATCCAGGAACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATG 11566 Query 111692 GCGATAGATCCCTTTCGA---CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 111748 |||| ||| ||||| || | |||| | || | || ||||| || ||| |||| || Sbjct 11567 GCGAAAGAGCCCTTGCGCTTGCCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAG 11626 Query 111749 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATT 111806 || || ||||| || | || || | || || |||| || || || ||||| | Sbjct 11627 ACACGCAGCATGGGCACGATGCCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAG--T 11684 Query 111807 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 111866 | || | | | |||||| | ||||| || || || |||| ||||| || Sbjct 11685 CACGCGCCCGGATGTTATGGATCGAGACACCAATCCCACCTGCGAACTTGGAGATGGCCG 11744 Query 111867 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 111926 |||| | | | ||||| |||||||||||| ||| ||||||||||| ||| | ||||| Sbjct 11745 CACATTGCTTGAGAGTGTCATAGATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGA 11804 Query 111927 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 111986 |||| ||| | |||||| | || || || || |||||||| || || || |||||| Sbjct 11805 AGCAGGAGGAGAGCTGCGGCCGCGGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAG 11864 Query 111987 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 112046 |||| | |||||||| | ||| ||||| | | | || | ||| ||| | Sbjct 11865 TGAAGAGCTTCTGGGACATGAGATTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTAT 11924 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGA 112106 |||| || || || || ||||||| ||||| ||| || ||||||| |||||| || | Sbjct 11925 GGATTCCAATGGCTACGCGCATGATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCA 11984 Query 112107 GCCGTTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | |||| || ||| |||||| || || |||| ||| || || || | || |||| Sbjct 11985 TC--TTGAGCAGGTAGGACTTCTCCAGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTC 12042 Query 112165 CCG 112167 || Sbjct 12043 TCG 12045 >seq225 Length=49998 Score = 109 bits (120), Expect = 7e-19 Identities = 320/491 (65%), Gaps = 8/491 (2%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||||||||| | | | || || | ||||| ||||| || || || || Sbjct 14808 ATCAAAACGACCCGGTCTTAATAAAGCTGAGTCTAAAATATCTACGCGGTTTGTAGCTGC 14867 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||| | | | | ||||| || ||||| ||||| | | ||||| | Sbjct 14868 AATTACAATAACACCATTATTAGTTTCAAATCCGTCCATTTCGGTTAAGAGCTGATTTAA 14927 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631 |||||||| | || ||||| | | | |||| | | ||| | || || || Sbjct 14928 CGTTTGTTCGCGTTCGTCATTCCCACCACCAACTCCAGAGCCTCTTTGTCTACCAACTGC 14987 Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC----GGGCGATTTCAAAGA 11687 ||||| ||||||||||||| |||||| ||| |||| || | || || ||| | Sbjct 14988 GTCAATTTCATCAATGAAGATAATACAAGGT--GTTTTTGCTTTAGCTCGCTT--AAAAA 15043 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| |||| ||| || || | ||||||||| | ||| ||||| | || || |||| Sbjct 15044 GATCACGAATTCTTGATGCTCCTATACCAACAAATAACTCTACAAATTCTGATGCGGAGC 15103 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 | | || || || |||| ||||| || || || || | | || || |||| Sbjct 15104 AACTAAAAAAGGGAACTTTTGCCTCACCTGCAATAGCCTTAGCTAATAAAGTTTTACCCG 15163 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 | ||||| || | | | | ||| ||||| || |||||| | | ||| | Sbjct 15164 TTCCTGGAGGGCCTGATAATAAAACACCTTTTGGGATTTTAGCACCAACACGAGTATAAC 15223 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 ||||||| ||| | |||| ||||| |||| || || ||||| | | ||||| | Sbjct 15224 GTTCGGGTTTCTTTAAAAAAGTAACAATTTCTTGAAACTCTTCTTTAACTTCATCAATAC 15283 Query 11928 CCTCAACATCA 11938 | |||||||| Sbjct 15284 CAGCAACATCA 15294 >seq2878 Length=6153 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||| |||||||| ||| | || | |||||| ||||| ||| || ||| Sbjct 6125 GGCATCAAACCCCTCTTCTTCAGCCAGAATATCGAGCAGAACGACCCACTGAAAAATATA 6066 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || |||||| ||||||||||| ||||| |||||||| ||| Sbjct 6065 CCTTCCACAGCCGCAAACGCAATCAGGCGCTCGGCGAAAGAG 6024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986067309600